IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	Breed	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence
	TRGC1	TRGC1*01	F				A2	+		Abyssinian	CM001379.3	EX1	IMGT000036	MAP	35701..36030
												EX2A	IMGT000036	MAP	37571..37696
												EX2B	IMGT000036	MAP	45951..45998
												EX3	IMGT000036	MAP	47665..47804
	TRGC2	TRGC2*01	F				A2	+		Abyssinian	CM001379.3	EX1	IMGT000036	MAP	79386..79715
												EX2A	IMGT000036	MAP	81507..81632
												EX2B	IMGT000036	MAP	87952..87999
												EX3	IMGT000036	MAP	89599..89738
	TRGC3	TRGC3*01	F				A2	+		Abyssinian	CM001379.3	EX1	IMGT000036	MAP	125168..125497
												EX2A	IMGT000036	MAP	126995..127117
												EX2B	IMGT000036	MAP	135071..135118
												EX3	IMGT000036	MAP	137168..137307
	TRGC4	TRGC4*01	F				A2	+		Abyssinian	CM001379.3	EX1	IMGT000036	MAP	complement(162728..163057)
												EX2A	IMGT000036	MAP	complement(161095..161220)
												EX2B	IMGT000036	MAP	complement(151137..151184)
												EX3	IMGT000036	MAP	complement(148919..149058)
	TRGC5	TRGC5*01	P	(1)			A2			Abyssinian	CM001379.3	EX1	IMGT000036	MAP	complement(212915..213245)
												EX2B	IMGT000036	MAP	complement(209747..209794)
												EX3	IMGT000036	MAP	complement(207612..207751)
	TRGC6	TRGC6*01	P	(2)			A2	+		Abyssinian	CM001379.3	EX1	IMGT000036	MAP	278509..278838
												EX2B	IMGT000036	MAP	282822..282869
												EX3	IMGT000036	MAP	285355..285493

MAP: Mapped reference sequences.

IMGT notes:

(1) frameshift in EX1
(2) frameshift in EX3

More information:

See also (IMGT Scientific chart):

Created:: 19/02/2019
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: domestic cat (Felis catus) TRGC