IMGT Repertoire (IG and TR)

Gene table: dog (Canis lupus familiaris) IGKC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name IMGT allele name Fct Chromosomal
T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
IGKC IGKC*01 F 17 + Basenji CM016447.1 C-REGION IMGT000067 MAP 307072..307400
IGKC*02 F 17 Boxer IGKC*01, CM000017.3 C-REGION IMGT000002 [1] (1) MAP 138700..139028

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) Sequence not in locus reference sequence (assembly Basenji_breed-1.1)
IMGT references:
  1. [1] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018) Sep 19. doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19. PMID: 28924718.. PMID:28924718
Last updated:
Imène Chentli, Perrine Pégorier