IMGT Repertoire (IG and TR)


Gene table: dog (Canis lupus familiaris) IGKV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature,
Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)		 Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)",
IGKV1 IGKV1-23 IGKV1-23*01 P (1) 17 Basenji CM016447.1 IMGT000067 MAP 19080..19577 ,
IGKV2 IGKV2-4 IGKV2-4*01 F 17 Basenji CM016447.1 IMGT000067 MAP 255704..256458 ,
IGKV2-4*02 F 17 + + Boxer IGKV2-4*01, CM000017.3 IMGT000002 [1] (13) MAP 87158..87912
IGKV2-5 IGKV2-5*01 P (2) 17 Basenji CM016447.1 IMGT000067 MAP 244420..245172 ,
IGKV2-5*02 F 17 + + Boxer IGKV2-5*01, CM000017.3 IMGT000002 [1] (13) MAP 75873..76625
IGKV2-6 IGKV2-6*01 F 17 Basenji CM016447.1 IMGT000067 MAP 236436..237188 Boxer CM000017.3 IMGT000002 [1] MAP 68771..69523 ,
IGKV2-7 IGKV2-7*01 F (3) 17 + + Basenji CM016447.1 IMGT000067 MAP 217200..224242 Boxer CM000017.3 IMGT000002 [1] MAP 49537..56582 ,
IGKV2-8 IGKV2-8*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 204860..205614 Boxer CM000017.3 IMGT000002 [1] MAP 37197..37951 ,
IGKV2-9 IGKV2-9*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 190315..191067 Boxer CM000017.3 IMGT000002 [1] MAP 22655..23407 ,
IGKV2-10 IGKV2-10*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 180573..181324 Boxer CM000017.3 IMGT000002 [1] MAP 12912..13663 ,
IGKV2-11 IGKV2-11*01 F 17 + + Basenji CM016447.1 IMGT000067 MAP 167846..168611 ,
IGKV2-11*02 F 17 + + Boxer IGKV2-11*01, CM000017.3 IMGT000002 [1] (13) MAP 579..1341
IGKV2-12 IGKV2-12*01 F 17 Basenji CM016447.1 IMGT000067 MAP 153198..153945 ,
IGKV2-12*02 F 17 Boxer IGKV2S19*01, CM000017.3 IMGT000002 [1] (13) MAP complement(216723..217470)
IGKV2-13 IGKV2-13*01 P (4) 17 Basenji CM016447.1 IMGT000067 MAP 135135..135881 ,
IGKV2-13*02 P (4) 17 Boxer IGKV2S18*01, CM000017.3 IMGT000002 [1] (13) MAP complement(232691..233437)
IGKV2-16 IGKV2-16*01 F (3) 17 + + Basenji CM016447.1 IMGT000067 MAP 83870..84835 Boxer IGKV2S16*01, CM000017.3 IMGT000002 [1] MAP complement(290512..291477)
IGKV2-19 IGKV2-19*01 P (5) 17 Basenji CM016447.1 IMGT000067 MAP 57300..57597 (14) Boxer IGKV2S15*01, CM000017.3 IMGT000002 [1] MAP complement(317520..317817) (14)
IGKV2-20 IGKV2-20*01 P (6) 17 Basenji CM016447.1 IMGT000067 MAP 45875..46675 ,
IGKV2-20*02 P (6) 17 Boxer IGKV2S14*01, CM000017.3 IMGT000002 [1] (13) MAP complement(328452..329253)
IGKV2-21 IGKV2-21*01 P (7) 17 Basenji CM016447.1 IMGT000067 MAP 29192..29988 ,
IGKV2-21*02 P (7) 17 Boxer IGKV2S12*01, CM000017.3 IMGT000002 [1] (13) MAP complement(347792..348587)
IGKV2S13 IGKV2S13*01 F 17 Boxer CM000017.3 IMGT000002 [1] (13) MAP complement(342363..343094) ,
IGKV3 IGKV3-3 IGKV3-3*01 P (8) 17 Basenji CM016447.1 IMGT000067 MAP complement(269302..270032) Boxer CM000017.3 IMGT000002 [1] MAP complement(100756..101461) ,
IGKV3-18 IGKV3-18*01 F 17 Basenji CM016447.1 IMGT000067 MAP 67565..68118 ,
IGKV3-18*02 F 17 Boxer IGKV3S1*01, CM000017.3 IMGT000002 [1] (13) MAP complement(306993..307546)
IGKV3S2 IGKV3S2*01 P (9) 17 Boxer CM000017.3 IMGT000002 [1] (13) MAP complement(267105..267389) (14) ,
IGKV4 IGKV4-1 IGKV4-1*01 ORF (10) 17 Basenji CM016447.1 IMGT000067 MAP complement(280762..281359) Boxer CM000017.3 IMGT000002 [1] MAP complement(112191..112788) ,
IGKV4-15 IGKV4-15*01 F 17 Basenji CM016447.1 IMGT000067 MAP complement(97559..98132) Boxer IGKV4S1*01, CM000017.3 IMGT000002 [1] MAP 283564..284140
IGKV7 IGKV7-2 IGKV7-2*01 P (7) 17 Basenji CM016447.1 IMGT000067 MAP complement(272392..273018) Boxer CM000017.3 IMGT000002 [1] MAP complement(103821..104447) ,
IGKV8 IGKV8-22 IGKV8-22*01 P (11) 17 Basenji CM016447.1 IMGT000067 MAP 25680..25960 (14) ,
IGKV9 IGKV9-24 IGKV9-24*01 P (1) 17 Basenji CM016447.1 IMGT000067 MAP 9956..10890 ,
IGKV(I) IGKV(I)-14 IGKV(I)-14*01 P (12) 17 Basenji CM016447.1 IMGT000067 MAP complement(126686..>126869) (14) Boxer IGKV(II)-1*01 ,
IGKV(II) IGKV(II)-1-1 IGKV(II)-1-1*01 P (12) 17 Basenji CM016447.1 IMGT000067 MAP <274577..>274732 (14) Boxer CM000017.3 IMGT000002 [1] MAP <106006..>106161 (14) ,
IGKV(II)-17 IGKV(II)-17*01 P (12) 17 Basenji CM016447.1 IMGT000067 MAP <80391..>80584 (14) ,
IGKV(II)-17*02 P (12) 17 Boxer CM000017.3 IMGT000002 [1] (13) MAP complement(<294746..>294939) (14) ,

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) frameshift in V-REGION
  2. (2) STOP-CODON in V-REGION
  3. (3) unexpected V-INTRON length, however this V-GENE has been found rearranged
  4. (4) frameshift in L-PART1
  5. (5) no L-PART1, frameshift in V-REGION
  6. (6) STOP-CODON in L-PART1
  7. (7) frameshifts in V-REGION
  8. (8) STOP-CODON in V-REGION, frameshift in V-REGION
  9. (9) no L-PART1, frameshifts in V-REGION
  10. (10) noncanonical V-HEPTAMER
  11. (11) frameshifts in V-REGION, no V-RS
  12. (12) truncated pseudogene not assigned to subgroups with functional genes
  13. (13) Sequence not in locus reference sequence (assembly Basenji_breed-1.1)
  14. (14) Positions of V-REGION
IMGT references:
  1. [1] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018) Sep 19. doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19. PMID: 28924718.. PMID:28924718
Created:
27/07/2017
Last updated:
29/07/2024
Authors:
Imène Chentli, Perrine Pégorier