IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	T		Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	T		Pr	Positions in the locus	Breed	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed			Clone names	Accession numbers	Positions in the sequence
	IGLC1	IGLC1*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	1419857..1420162
	IGLC2	IGLC2*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2553145..2553461
	IGLC3	IGLC3*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2557181..2557497
	IGLC4	IGLC4*01	F	(1)						Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2560438..>2560725
	IGLC5	IGLC5*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2566280..2566596
	IGLC6	IGLC6*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2570767..2571083
	IGLC7	IGLC7*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2574758..2575074
	IGLC8	IGLC8*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2578781..2579097
	IGLC9	IGLC9*01	F							Boxer	CM000026.3	C-REGION	IMGT000003	[1]	MAP	2582025..2582341

MAP: Mapped reference sequences.

IMGT notes:

(1) Functionality defined for the available sequence of the gene (partial gene in 3' because of gaps in the sequence)

IMGT references:

[1] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018). doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19.. PMID:28924718

More information:

See also (IMGT Scientific chart):

Created:: 30/10/2018
Last updated:: 22/09/2023
Authors:: Joumana Jabado-Michaloud

IMGT Repertoire (IG and TR)

Gene table: dog (Canis lupus familiaris) IGLC