IMGT Repertoire (IG and TR)

Gene table: dog (Canis lupus familiaris) TRBD

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRBD1 TRBD1 TRBD1*01 F 16 + + Boxer CM000016.3 IMGT000005 [3] MAP 243776-243854 Boxer AAEX02035465 [1] complement(50579-50657)
TRBD2 TRBD2 TRBD2*01 F + + - HE653929 [2] (1) 6630-6710

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) Sequence not in locus reference sequence (assembly CanFam3.1)
IMGT references:
  1. [1] Lindblad-Toh K. et al., Nature, 438, 803-819 (2005). PMID:16341006
  2. [2] Mineccia M. et al., Dev Comp Immunol., 37, 279-293 (2012). PMID:22465586
  3. [3] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018). doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19.. PMID:28924718
Last updated:
Giovanna Linguiti, Emilie Carillon, Amandine Lacan, Perrine Pégorier