IMGT Repertoire (IG and TR)


Gene table: dog (Canis lupus familiaris) TRBV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)		 Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
TRBV1 TRBV1 TRBV1*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 673-1315 Boxer AAEX02035468 [1] complement(29912-30554)
TRBV2 TRBV2-1 TRBV2-1*01 P (1) 16 Boxer CM000016.3 IMGT000005 [2] MAP 53888-54161 (14) Boxer AAEX02035467 [1] complement(1239-1512) (14)
TRBV2-2 TRBV2-2*01 P (2) 16 Boxer CM000016.3 IMGT000005 [2] MAP 61146-61622 Boxer AAEX02035466 [1] complement(158055-158531)
TRBV2-3 TRBV2-3*01 P (3) 16 Boxer CM000016.3 IMGT000005 [2] MAP 71818-72295 Boxer AAEX02035466 [1] complement(147382-147859)
TRBV3 TRBV3-1 TRBV3-1*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 56199-56698 Boxer AAEX02035466 [1] complement(162979-163478)
TRBV3-2 TRBV3-2*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 66832-67331 Boxer AAEX02035466 [1] complement(152346-152845)
TRBV3-3 TRBV3-3*01 P (4) 16 Boxer CM000016.3 IMGT000005 [2] MAP 75352-75638 (14) Boxer AAEX02035466 [1] complement(144039-144325) (14)
TRBV4 TRBV4-1 TRBV4-1*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 52314-52798 Boxer AAEX02035467 [1] complement(2602-3086)
TRBV4-2 TRBV4-2*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 59690-60182 Boxer AAEX02035466 [1] complement(159495-159987)
TRBV4-3 TRBV4-3*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 70362-70854 Boxer AAEX02035466 [1] complement(148823-149315)
TRBV4-4 TRBV4-4*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 78591-79079 Boxer AAEX02035466 [1] complement(140598-141086)
TRBV5 TRBV5-1 TRBV5-1*01 P (5) 16 Boxer CM000016.3 IMGT000005 [2] MAP 87306-87772 Boxer AAEX02035466 [1] complement(131905-132371)
TRBV5-2 TRBV5-2*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 91055-91570 Boxer AAEX02035466 [1] complement(128107-128622)
TRBV5-3 TRBV5-3*01 P (6) 16 Boxer CM000016.3 IMGT000005 [2] MAP 108680-109192 Boxer AAEX02035466 [1] complement(110485-110997)
TRBV5-4 TRBV5-4*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 115282-115792 Boxer AAEX02035466 [1] complement(103885-104395)
TRBV6 TRBV6 TRBV6*01 P (7) 16 Boxer CM000016.3 IMGT000005 [2] MAP 96161-96634 Boxer AAEX02035466 [1] complement(123043-123516)
TRBV7 TRBV7 TRBV7*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 99881-100385 Boxer AAEX02035466 [1] complement(119292-119796)
TRBV8 TRBV8 TRBV8*01 P (8) 16 Boxer CM000016.3 IMGT000005 [2] MAP 103002-103512 Boxer AAEX02035466 [1] complement(116165-116675)
TRBV10 TRBV10 TRBV10*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 120110-120591 Boxer AAEX02035466 [1] complement(99086-99567)
TRBV11 TRBV11 TRBV11*01 P (6) 16 Boxer CM000016.3 IMGT000005 [2] MAP 127607-128084 Boxer AAEX02035466 [1] complement(91593-92070)
TRBV12 TRBV12-1 TRBV12-1*01 P (9) 16 Boxer CM000016.3 IMGT000005 [2] MAP 134448-134934 Boxer AAEX02035466 [1] complement(84743-85229)
TRBV12-2 TRBV12-2*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 141806-142291 Boxer AAEX02035466 [1] complement(77386-77871)
TRBV15 TRBV15 TRBV15*01 ORF (10) 16 Boxer CM000016.3 IMGT000005 [2] MAP 146914-147420 Boxer AAEX02035466 [1] complement(72257-72763)
TRBV16 TRBV16 TRBV16*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 150525-151017 Boxer AAEX02035466 [1] complement(68660-69152)
TRBV18 TRBV18 TRBV18*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 160984-161618 Boxer AAEX02035466 [1] complement(58059-58693)
TRBV19 TRBV19 TRBV19*01 P (11) 16 Boxer CM000016.3 IMGT000005 [2] MAP 164384-164898 Boxer AAEX02035466 [1] complement(54779-55293)
TRBV20 TRBV20 TRBV20*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 169345-170046 Boxer AAEX02035466 [1] complement(49631-50332)
TRBV21 TRBV21 TRBV21*01 P (11) 16 Boxer CM000016.3 IMGT000005 [2] MAP 176686-177244 Boxer AAEX02035466 [1] complement(42433-42991)
TRBV22 TRBV22 TRBV22*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 181198-181708 Boxer AAEX02035466 [1] complement(37969-38479)
TRBV24 TRBV24 TRBV24*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 190118-190632 Boxer AAEX02035466 [1] complement(29045-29559)
TRBV25 TRBV25 TRBV25*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP 195407-195906 Boxer AAEX02035466 [1] complement(23771-24270)
TRBV26 TRBV26 TRBV26*01 F (12) 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 202255-202769 Boxer AAEX02035466 [1] complement(16908-17422)
TRBV27 TRBV27 TRBV27*01 P (13) 16 Boxer CM000016.3 IMGT000005 [2] MAP 211567-212070 Boxer AAEX02035466 [1] complement(7607-8110)
TRBV28 TRBV28 TRBV28*01 F (12) 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 220867-221367 Boxer AAEX02035465 [1] complement(73066-73566)
TRBV29 TRBV29 TRBV29*01 F 16 + + Boxer CM000016.3 IMGT000005 [2] MAP 227277-227910 Boxer AAEX02035465 [1] complement(66523-67156)
TRBV30 TRBV30 TRBV30*01 F 16 Boxer CM000016.3 IMGT000005 [2] MAP complement(261187-261932) Boxer AAEX02035465 [1] 32501-33246

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) in frame STOP-CODON in FR2-IMGT, frameshift in FR3-IMGT, no V-RS
  2. (2) in frame STOP-CODON in FR2-IMGT, frameshift in FR3-IMGT
  3. (3) in frame STOP-CODON in FR2-IMGT, frameshifts in FR3-IMGT
  4. (4) no L-INTRON-L, in frame STOP-CODONs in V-REGION
  5. (5) CONSERVED-TRP is replaced by in frame STOP-CODON, frameshifts in V-REGION
  6. (6) frameshifts in V-REGION
  7. (7) in frame STOP-CODONs in L-PART2 and in FR1-IMGT, frameshift in FR3-IMGT
  8. (8) frameshift in FR3-IMGT
  9. (9) 1st-CYS is replaced by in frame STOP-CODON
  10. (10) noncanonical V-HEPTAMER: cacggag instead of cacagag
  11. (11) in frame STOP-CODON in FR3-IMGT
  12. (12) STOP-CODON at position 108 (last 3' codon of germline CDR3-IMGT) may disappear during rearrangements
  13. (13) INIT-CODON is replaced by Thr
  14. (14) Positions of V-REGION
IMGT references:
  1. [1] Lindblad-Toh K. et al., Nature, 438, 803-819 (2005). PMID:16341006
  2. [2] Martin J. et al. Immunogenetics 2018 Apr;70(4):223-236 (2018). doi: 10.1007/s00251-017-1028-0. Epub 2017 Sep 19.. PMID:28924718
Created:
01/10/2009
Last updated:
22/09/2023
Authors:
Amandine Lacan, Perrine Pégorier