IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	Chromosomal localization	R	T	Pr	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	Chromosomal localization	R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (D-GENE-UNIT)	Secondary accession numbers		Breed	Clone names	Accession numbers	Positions in the sequence (D-GENE-UNIT)
TRDD1	TRDD1S1	TRDD1S1*01	F			+	+					JH481615	[1]	60669..60744
TRDD2	TRDD2S1	TRDD2S1*01	F			+	+					JH481615	[1]	68866..68943

IMGT references:

[1] Linguiti, G. et al., BMC Genomics, 17, 634 (2016). PMID:27528257

More information:

See also (IMGT Scientific chart):

Created:: 31/08/2018
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: bottlenose dolphin (Tursiops truncatus) TRDD