IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	Breed	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence
	TRGC	TRGC*01	F	(1)				+				EX1	JH473572	[1]	37557..37886			IMGT000015	40157..40486
												EX2	JH473572	[1]	41748..41783			IMGT000015	44347..44382
												EX3	JH473572	[1]	43319..43458			IMGT000015	45919..46058

IMGT notes:

(1) noncanonical DONOR-SPLICE: nat instead of ngt, however this C-GENE has been found spliced to a J-REGION in cDNA

IMGT references:

[1] Linguiti, G. et al., BMC Genomics, 17, 634 (2016). PMID:27528257

More information:

See also (IMGT Scientific chart):

Created:: 24/07/2018
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: bottlenose dolphin (Tursiops truncatus) TRGC