IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRBJ1-1	TRBJ1-1*01	ORF	(1)						Sable			IMGT000023	[1]	201926..202001
	TRBJ1-2	TRBJ1-2*01	F							Sable			IMGT000023	[1]	202061..202132
	TRBJ1-3	TRBJ1-3*01	P	(2)						Sable			IMGT000023	[1]	202708..202785
	TRBJ1-4	TRBJ1-4*01	ORF	(3)						Sable			IMGT000023	[1]	203301..203378
	TRBJ1-5	TRBJ1-5*01	F							Sable			IMGT000023	[1]	203547..203624
	TRBJ1-6	TRBJ1-6*01	F							Sable			IMGT000023	[1]	204017..204097
	TRBJ2-1	TRBJ2-1*01	ORF	(4)						Sable			IMGT000023	[1]	211310..211387
	TRBJ2-2	TRBJ2-2*01	F							Sable			IMGT000023	[1]	211506..211584
	TRBJ2-3	TRBJ2-3*01	F							Sable			IMGT000023	[1]	211747..211823
	TRBJ2-4	TRBJ2-4*01	F							Sable			IMGT000023	[1]	211882..211958
	TRBJ2-5	TRBJ2-5*01	ORF	(5)						Sable			IMGT000023	[1]	211987..212067
	TRBJ2-6	TRBJ2-6*01	F							Sable			IMGT000023	[1]	212217..212291

IMGT notes:

(1) noncanonical J-NONAMER: gtttgtttc instead of ggtttttgt
(2) STOP-CODON in J-REGION
(3) noncanonical J-MOTIF: FAXG instead of FGXG
(4) noncanonical J-NONAMER: aaattcttg instead of ggtttttgt
(5) noncanonical J-NONAMER: tctctcgga instead of ggtttttgt

IMGT references:

[1] Gerritsen B et al., PhD thesis chapter, Utrecht University (2018).

More information:

See also (IMGT Scientific chart):

Created:: 21/09/2018
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: domestic ferret (Mustela putorius furo) TRBJ