IMGT Repertoire (IG and TR)

Gene table: rabbit (Oryctolagus cuniculus) IGHD

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Positions in contigs: limits from the first nucleotide of 5'D-RS to the last nucleotide 3'D-RS.

IMGT subgroup IMGT gene name IMGT allele name Fct Haplotypes R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence (D-REGION) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (D-REGION)
IGHD1 IGHD1-1 IGHD1-1*01 F F-I 225P18 AY386697 [1] 133721-133751 219D23 AY386695 [1] 40612-40642
IGHD2 IGHD2-1 IGHD2-1*01 F F-I 225P18 AY386697 [1] 135212-135236 219D23 AY386695 [1] 42102-42126
IGHD3 IGHD3-1 IGHD3-1*01 ORF F-I 225P18 AY386697 [1] (1) 135437-135470 219D23 AY386695 [1] 42327-42360
IGHD3-2 IGHD3-2*01 F F-I 219D23 AY386695 [1] 46938-46971
IGHD3-3 IGHD3-3*01 F F-I 219D23 AY386695 [1] 48970-49003
IGHD4 IGHD4-1 IGHD4-1*01 F F-I 225P18 AY386697 [1] 136922-136945 219D23 AY386695 [1] 43812-43835
IGHD4-2 IGHD4-2*01 F F-I 219D23 AY386695 [1] 48553-48576
IGHD5 IGHD5-1 IGHD5-1*01 F F-I 219D23 AY386695 [1] 48727-48768
IGHD6 IGHD6-1 IGHD6-1*01 F F-I 219D23 AY386695 [1] 51181-51212
IGHD7 IGHD7-1 IGHD7-1*01 F F-I 219D23 AY386695 [1] 55826-55851
IGHD8 IGHD8-1 IGHD8-1*01 F F-I 219D23 AY386695 [1] 62445-62470
IMGT notes:
  1. (1) ORF because of defective 3'D-RS
IMGT references:
  1. [1] Ros F. et al., Gene, 330, 49-59 (2004). PMID:15087123
Last updated:
Claire Poiron, Fatena Bellahcene