IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Positions in contigs: limits from the first nucleotide of 5'D-RS to the last nucleotide 3'D-RS.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	Haplotypes	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	Haplotypes	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence (D-REGION)			Secondary accession numbers	Strain	Clone names	Accession numbers	Positions in the sequence (D-REGION)
IGHD1	IGHD1-1	IGHD1-1*01	F	F-I						225P18		AY386697	[1]		133721-133751			219D23	AY386695	[1]	40612-40642
IGHD2	IGHD2-1	IGHD2-1*01	F	F-I						225P18		AY386697	[1]		135212-135236			219D23	AY386695	[1]	42102-42126
IGHD3	IGHD3-1	IGHD3-1*01	ORF	F-I						225P18		AY386697	[1]	(1)	135437-135470			219D23	AY386695	[1]	42327-42360
	IGHD3-2	IGHD3-2*01	F	F-I						219D23		AY386695	[1]		46938-46971
	IGHD3-3	IGHD3-3*01	F	F-I						219D23		AY386695	[1]		48970-49003
IGHD4	IGHD4-1	IGHD4-1*01	F	F-I						225P18		AY386697	[1]		136922-136945			219D23	AY386695	[1]	43812-43835
IGHD4	IGHD4-2	IGHD4-2*01	F	F-I						219D23		AY386695	[1]		48553-48576
IGHD5	IGHD5-1	IGHD5-1*01	F	F-I						219D23		AY386695	[1]		48727-48768
IGHD6	IGHD6-1	IGHD6-1*01	F	F-I						219D23		AY386695	[1]		51181-51212
IGHD7	IGHD7-1	IGHD7-1*01	F	F-I						219D23		AY386695	[1]		55826-55851
IGHD8	IGHD8-1	IGHD8-1*01	F	F-I						219D23		AY386695	[1]		62445-62470

IMGT notes:

(1) ORF because of defective 3'D-RS

IMGT references:

[1] Ros F. et al., Gene, 330, 49-59 (2004). PMID:15087123

See also (IMGT Scientific chart):

Created:: 16/02/2010
Last updated:: 22/09/2023
Authors:: Claire Poiron, Fatena Bellahcene

IMGT Repertoire (IG and TR)

Gene table: rabbit (Oryctolagus cuniculus) IGHD