IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Haplotypes	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Haplotypes	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence (J-REGION)	Secondary accession numbers		Strain	Clone names	Accession numbers	Positions in the sequence (J-REGION)
	IGHJ1	IGHJ1*01	F	F-I		+				JH1		AY386695	[2]	97818-97870			J1	S78752	[3]	(2)	1-42
				F-I		+				JH1		AY386695	[2]	97818-97870			JH1	U62586	[4]		848-900
				G/G		+											J1	M24223	[1]	(1)	28-80
	IGHJ2	IGHJ2*01	F	G/G		+				J2		M24223	[1]	297-346			JH2	S78752	[3]		260-309
	IGHJ2	IGHJ2*02	F	F-I		+				JH2		AY386695	[2]	98090-98139			JH2	U62586	[4]		1119-1168
	IGHJ3	IGHJ3*01	F	G/G		+				J3		M24223	[1]	636-688			JH3	S78752	[3]		599-651
	IGHJ3	IGHJ3*02	F	F-I		+				JH3		AY386695	[2]	98432-98482			JH3	U62586	[4]		1457-1509
	IGHJ4	IGHJ4*01	F	G/G		+				J4		M24223	[1]	849-896			JH4	S78752	[3]		813-860
	IGHJ4	IGHJ4*02	F	F-I		+				JH4		AY386695	[2]	98642-98689			JH4	U62586	[4]		1669-1716
	IGHJ5	IGHJ5*01	F	G/G	+	+				J5		M24223	[1]	1189-1239			JH5	S78752	[3]		1152-1202
		IGHJ5*01	F	E	+	+											JH5	U85584	[5]		392-442
		IGHJ5*02	F	F-I		+				JH5		AY386695	[2]	98981-99031			JH5	U62586	[4]		2008-2058
	IGHJ6	IGHJ6*01	F	G/G		+				JH6		S78752	[3]	1719-1772
	IGHJ6	IGHJ6*02	F	F-I		+				JH6		AY386695	[2]	99550-99603			JH6	U62586	[4]		2577-2630

IMGT notes:

(1) partial J-RS in 5' side
(2) partial J-REGION in 5' side

IMGT references:

[1] Becker R.S. et al., J.Immunol., 142, 1351-1355 (1989). PMID:2492580
[2] Ros F. et al., Gene, 330, 49-59 (2004). PMID:15087123
[3] Knight K.L. et al., J.Immunol., 155, 684-691 (1995). PMID:7608545
[4] Chen H.T et al., Mol. Immunol., 33, 1313-1321 (1996). PMID:9171891
[5] Lanning D.K et al., J.Immunol., 159, 4403-4407 (1997). PMID:9379038

See also (IMGT Scientific chart):

Created:: 15/02/2010
Last updated:: 22/09/2023
Authors:: Christèle Martinez-Jean, Claire Poiron, Fatena Bellahcene

IMGT Repertoire (IG and TR)

Gene table: rabbit (Oryctolagus cuniculus) IGHJ