IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	Breed	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed			Clone names	Accession numbers	Positions in the sequence
	TRBC1	TRBC1*01	F				+		Thorbecke inbred		EX1	IMGT000032	[1]		508198..508584			M12889	[2,3]	560..945
											EX2	IMGT000032	[1]		509426..509443			M12889	[2,3]	946..963
											EX3	IMGT000032	[1]		509576..509682			M12889	[2,3]	964..1071
											EX4	IMGT000032	[1]		509996..510013			M12889	[2,3]	1072..1089
		TRBC1*02	F								EX1	M14577	[3]	(1)	898..1284
		TRBC1*03	F							pBE20	EX1	M26312	[3,4]	(1)	2184..2570
											EX2	M26312	[3,4]	(1)	3409..3426
											EX3	M26312	[3,4]	(1)	3559..3665
											EX4	M26312	[3,4]	(1)	3964..3981
		TRBC1*04	F							pB[65,AM23,18]	EX1	M26603	[3,5]	(1)	2220..2606
											EX2	M26603	[3,5]	(1)	3447..3464
											EX3	M26603	[3,5]	(1)	3596..3702
											EX4	M26603	[3,5]	(1)	4016..4033
	TRBC2	TRBC2*01	F				+		Thorbecke inbred		EX1	IMGT000032	[1]		517135..517521
											EX2	IMGT000032	[1]		518363..518380
											EX3	IMGT000032	[1]		518513..518619
											EX4	IMGT000032	[1]		518919..518936

IMGT notes:

(1) Sequence not in locus reference sequence (assembly Orycun2.0)

IMGT references:

[1] Antonacci R., et al. Immunogenetics 66:255-266 (2014). PMID:24500788
[2] Angiolillo A.L., et al. Proc. Natl. Acad. Sci. U.S.A. 82(13):4498-4502 (1985). PMID:2989826
[3] Komatsu M., et al. J. Immunol. 138(5):1621-1626 (1987). PMID:2879869
[4] Harindranath N., et al. J. Immunol. 142(9):3292-3297 (1989). PMID:2523428
[5] Harindranath N., et al. J. Immunogenetics 30(6):465-474 (1989). PMID:2592023

More information:

See also (IMGT Scientific chart):

Created:: 15/01/2019
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: rabbit (Oryctolagus cuniculus) TRBC