IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed			Clone names		Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRBJ1-1	TRBJ1-1*01	F							Thorbecke inbred			IMGT000032	[1]		503695..503770
	TRBJ1-2	TRBJ1-2*01	F				+	+		Thorbecke inbred			IMGT000032	[1]		503830..503905
	TRBJ1-3	TRBJ1-3*01	F							Thorbecke inbred			IMGT000032	[1]		504356..504433
	TRBJ1-4	TRBJ1-4*01	F							Thorbecke inbred			IMGT000032	[1]		504900..504978
	TRBJ1-5	TRBJ1-5*01	ORF	(1)						Thorbecke inbred			IMGT000032	[1]		505171..505241
	TRBJ1-6	TRBJ1-6*01	F							Thorbecke inbred			IMGT000032	[1]		505663..505710
	TRBJ2-1	TRBJ2-1*01	F										S60737	[2]	(2)	1361..1441				M61124	[2]	1361..1441
	TRBJ2-2	TRBJ2-2*01	F										S60737	[2]	(2)	1576..1654				M61124	[2]	1576..1654
	TRBJ2-3	TRBJ2-3*01	F										S60737	[2]	(2)	1829..1905				M61124	[2]	1829..1905
	TRBJ2-4	TRBJ2-4*01	F										S60737	[2]	(2)	1966..2042				M61124	[2]	1966..2042
	TRBJ2-5	TRBJ2-5*01	F										S60737	[2]	(2)	2112..2304				M26603	[3,4]	123..202
	TRBJ2-5	TRBJ2-5*01	F										S60737	[2]	(2)	2112..2304				M61124	[2]	2179..2258
	TRBJ2-6	TRBJ2-6*01	F										S60737	[2]	(2)	2349..2423				M26603	[3,4]	293..367
		TRBJ2-6*01	F										S60737	[2]	(2)	2349..2423				M61124	[2]	2349..2423
		TRBJ2-6*02	F				+	+		Thorbecke inbred			IMGT000032	[1]		513223..513269	(3)

IMGT notes:

(1) noncanonical J-NONAMER: agggtttgc instead of ggtttttgt, noncanonical J-HEPTAMER: aactgtg instead of ggctgtg
(2) Sequence not in locus reference sequence (assembly Orycun2.0)
(3) Positions of J-REGION

IMGT references:

[1] Antonacci R., et al. Immunogenetics 66:255-266 (2014). PMID:24500788
[2] Harindranath N., et al. Mol. Immunol. 28(8):881-888 (1991). PMID:1678859
[3] Komatsu M., et al. J. Immunol. 138(5):1621-1626 (1987). PMID:2879869
[4] Harindranath N., et al. J. Immunogenetics 30(6):465-474 (1989). PMID:2592023

More information:

See also (IMGT Scientific chart):

Created:: 15/01/2019
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: rabbit (Oryctolagus cuniculus) TRBJ