Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Exons Accession numbers Positions in the sequence (exons) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (exons)
IGHA IGHA*01 F + BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(462152..462451) BN/SsNHsdMCW AABR03049801 complement(14101..14400)
H-CH2 RatNor_6_chr6 complement(461602..461925) BN/SsNHsdMCW AABR03049801 complement(13551..13874)
CH3-CHS RatNor_6_chr6 complement(461007..461398) BN/SsNHsdMCW AABR03049801 complement(12956..13347)
M RatNor_6_chr6 complement(458479..458672) BN/SsNHsdMCW AABR03049801 complement(10428..10621)
H-CH2 M13801 [1] (1) ‹1..34
CH3-CHS M13801 [1] (1) 236..627
IGHD IGHD*01 F BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(639019..639291) BN/SsNHsdMCW AABR03049259 complement(13595..13867)
H RatNor_6_chr6 complement(638546..638647) BN/SsNHsdMCW AABR03049259 complement(13122..13223)
CH3 RatNor_6_chr6 complement(636872..637192) BN/SsNHsdMCW AABR03049259 complement(11448..11768)
CHS RatNor_6_chr6 complement(632124..632188) BN/SsNHsdMCW AABR03049259 complement(6700..6764)
CHX (2) RatNor_6_chr6 complement(631671..631741) BN/SsNHsdMCW AABR03049259 complement(6247..6317)
M1 RatNor_6_chr6 complement(630522..630679) BN/SsNHsdMCW AABR03049259 complement(5098..5255)
M2 RatNor_6_chr6 complement(630215..630220) BN/SsNHsdMCW AABR03049259 complement(4791..4796)
IGHE IGHE*01 F BN/SsNHsdMCW CH1 K02901 [2] 192..473 X00923 [3] 192..473
CH2 K02901 [2] 653..973 X00923 [3] 653..973
CH3 K02901 [2] 1056..1376 X00923 [3] 1056..1376
CH4-CHS K02901 [2] 1461..1822 X00923 [3] 1461..1822
M1 K02901 [2] 4145..4278
M2 K02901 [2] 4361..4441
IGHE*02 F + BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(474560..474841) BN/SsNHsdMCW AABR03049801 complement(26509..26790)
CH2 RatNor_6_chr6 complement(474060..474380) BN/SsNHsdMCW AABR03049802 complement(26009..26329)
CH3 RatNor_6_chr6 complement(473657..473977) BN/SsNHsdMCW AABR03049803 complement(25606..25926)
CH4-CHS RatNor_6_chr6 complement(473211..473572) BN/SsNHsdMCW AABR03049804 complement(25160..25521)
M1 RatNor_6_chr6 complement(470865..470998) BN/SsNHsdMCW AABR03049805 complement(22814..22947)
M2 RatNor_6_chr6 complement(470702..470782) BN/SsNHsdMCW AABR03049806 complement(22651..22731)
IGHG1 IGHG1*01 F + BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(522344..522634) BN/SsNHsdMCW AABR03048905 complement(42238..42528)
IgG1 M28670 [4] 479..769
H RatNor_6_chr6 complement(521960..522004) BN/SsNHsdMCW AABR03048905 complement(41854..41898)
IgG1 M28670 [4] 1108..1152
CH2 RatNor_6_chr6 complement(521535..521855) BN/SsNHsdMCW AABR03048905 complement(41429..41749)
IgG1 M28670 [4] 1257..1577
CH3-CHS RatNor_6_chr6 complement(521099..521418) BN/SsNHsdMCW AABR03048905 complement(40993..41312)
IgG1 M28670 [4] 1692..2011
M13803 [1] 22..341
M1 RatNor_6_chr6 complement(519578..519708) BN/SsNHsdMCW AABR03048905 complement(39472..39602)
M2 RatNor_6_chr6 complement(518649..518729) BN/SsNHsdMCW AABR03048905 complement(38543..38623)
IGHG2A IGHG2A*01 F + BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(556941..557231) BN/SsNHsdMCW AABR03049560 complement(14917..15207)
IgG-2a M28669 [4] 509..799
H RatNor_6_chr6 complement(556569..556601) BN/SsNHsdMCW AABR03049560 complement(14545..14577)
IgG-2a M28669 [4] 1139..1171
CH2 RatNor_6_chr6 complement(556135..556455) BN/SsNHsdMCW AABR03049560 complement(14111..14431)
IgG-2a M28669 [4] 1286..1606
CH3-CHS RatNor_6_chr6 complement(555699..556018) BN/SsNHsdMCW AABR03049560 complement(13675..13994)
IgG-2a M28669 [4] 1723..2042
M13804 [1] 22..341
M1 RatNor_6_chr6 complement(554171..554301) BN/SsNHsdMCW AABR03049560 complement(12147..12277)
M2 RatNor_6_chr6 complement(553255..553335) BN/SsNHsdMCW AABR03049560 complement(11231..11311)
IGHG2B IGHG2B*01 F + BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(499458..499742) BN/SsNHsdMCW AABR03048905 complement(19302..19586)
IgG-2b M28671 [4] 146..430
H RatNor_6_chr6 complement(499092..499154) BN/SsNHsdMCW AABR03048905 complement(18936..18998)
IgG-2b M28671 [4] 735..797
CH2 RatNor_6_chr6 complement(498653..498982) BN/SsNHsdMCW AABR03048905 complement(18497..18826)
IgG-2b M28671 [4] 907..1236
CH3-CHS RatNor_6_chr6 complement(498234..498553) BN/SsNHsdMCW AABR03048905 complement(18078..18397)
IgG-2b M28671 [4] 1336..1655
M13802 [1] 23..342
M1 RatNor_6_chr6 complement(496749..496879) BN/SsNHsdMCW AABR03048905 complement(16593..16723)
M2 RatNor_6_chr6 complement(496135..496215) BN/SsNHsdMCW AABR03048905 complement(15979..16059)
IGHG2C IGHG2C*01 F + BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(599442..599732) BN/SsNHsdMCW AABR03049912 complement(12387..12677)
H RatNor_6_chr6 complement(599032..599076) BN/SsNHsdMCW AABR03049912 complement(11977..12021)
CH2 RatNor_6_chr6 complement(598604..598933) BN/SsNHsdMCW AABR03049912 complement(11549..11878)
CH3-CHS RatNor_6_chr6 complement(598185..598504) BN/SsNHsdMCW AABR03049912 complement(11130..11449)
M1 RatNor_6_chr6 complement(596617..596747) BN/SsNHsdMCW AABR03049912 complement(9562..9692)
M2 RatNor_6_chr6 complement(596008..596088) BN/SsNHsdMCW AABR03049912 complement(8953..9033)
IGHM IGHM*01 F + BN; Sprague-Dawley CH1 RatNor_6_chr6 complement(645217..645531) BN/SsNHsdMCW AABR03049259 complement(19785..20099)
CH2 RatNor_6_chr6 complement(644759..645097) BN/SsNHsdMCW AABR03049259 complement(19327..19665)
CH3 RatNor_6_chr6 complement(644161..644478) BN/SsNHsdMCW AABR03049259 complement(18729..19046)
CH4-CHS RatNor_6_chr6 complement(643663..644054) BN/SsNHsdMCW AABR03049259 complement(18231..18622)
M1 RatNor_6_chr6 complement(641819..641934) BN/SsNHsdMCW AABR03049259 complement(16395..16510)
M2 RatNor_6_chr6 complement(641694..641699) BN/SsNHsdMCW AABR03049259 complement(16270..16275)
CH2 M13800 [1] 78..416
IMGT notes:
  1. (1) Partial C-REGION: no CH1 and partial H-CH2 in 5'
  2. (2) Unusual exon
IMGT references:
  1. [1] Brueggemann M. et al., Proc. Natl. Acad. Sci. U.S.A, 83, 6075-6079 (1986). PMID:3016742
  2. [2] Hellman L. et al., Gene, 68, 93-100 (1988). PMID:3016742
  3. [3] Steen M.L. et al., J. Mol. Biol., 177, 19-32 (1984). PMID:6086939
  4. [4] Brueggemann M., Gene, 74, 473-782 (1988). PMID:3149946
Last updated:
Mélanie Arrivet, Nathalie Bosc, Fatena Bellahcene