IMGT Repertoire (IG and TR)

Gene table: Norway rat (Rattus norvegicus) IGHJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Positions in contigs: limits from the first nucleotide of J-REGION to the last nucleotide.

IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence (J-GENE-UNIT) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (J-GENE-UNIT)
IGHJ1 IGHJ1*01 F + + BN; Sprague-Dawley RatNor_6_chr6 complement(654040..654134) BN/SsNHsdMCW AABR03049259
M13798 [1]
IGHJ2 IGHJ2*01 F + + BN; Sprague-Dawley RatNor_6_chr6 complement(653733..653821) BN/SsNHsdMCW AABR03049259
X56791 [2]
IGHJ3 IGHJ3*01 F + + BN; Sprague-Dawley RatNor_6_chr6 complement(653345..653434) BN/SsNHsdMCW AABR03049259
X56791 [2]
IGHJ4 IGHJ4*01 F + + BN; Sprague-Dawley RatNor_6_chr6 complement(652773..652865) BN/SsNHsdMCW AABR03049259
X56791 [2]
IMGT references:
  1. [1] Brueggemann M. et al., Proc. Natl. Acad. Sci. U.S.A., 83, 6075-6079 (1986). PMID:3016742
  2. [2] Lang P. and Mocikat R., Gene, 102, 261-264 (1991). PMID:1908401
Last updated:
Mélanie Arrivet, Fatena Bellahcene