IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	Breed	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed			Clone names	Accession numbers	Positions in the sequence
	TRBC1	TRBC1*01	F			4			Romanov		EX1	AM420900	[1]		6906..7295		Rambouillet	CM008475.1	IMGT000042	MAP	463303..463692
											EX2	AM420900	[1]		7971..7988		Rambouillet	CM008475.1	IMGT000042	MAP	464371..464388
											EX3	AM420900	[1]		8145..8251		Rambouillet	CM008475.1	IMGT000042	MAP	464545..464651
											EX4	AM420900	[1]		8538..8555		Rambouillet	CM008475.1	IMGT000042	MAP	464978..464995
		TRBC1*02	F			4			Altamurana		EX1	AJ309004	[2]		59..448
											EX2	AJ309004	[2]		1124..1141
											EX3	AJ309004	[2]		1298..1404
											EX4	AJ309004	[2]		1691..1708
	TRBC2	TRBC2*01	F			4	+		Romanov		EX1	AM420900	[1]		25381..25770
											EX2	AM420900	[1]		26446..26463
											EX3	AM420900	[1]		26625..26731
											EX4	AM420900	[1]		27007..27024
		TRBC2*02	F			4			Rambouillet	CM008475.1	EX1	IMGT000042		MAP	481808..482197
											EX2	IMGT000042		MAP	482857..482874
											EX3	IMGT000042		MAP	483036..483142
											EX4	IMGT000042		MAP	483418..483435
	TRBC3	TRBC3*01	F			4	+		Romanov		EX1	AM420900	[1]		16393..16782
											EX2	AM420900	[1]		17189..17206
											EX3	AM420900	[1]		17365..17471
											EX4	AM420900	[1]		17783..17800
		TRBC3*02	F			4			Rambouillet	CM008475.1	EX1	IMGT000042		MAP	472865..473254
											EX2	IMGT000042		MAP	473660..473677
											EX3	IMGT000042		MAP	473835..473941
											EX4	IMGT000042		MAP	474253..474270

MAP: Mapped reference sequences.

IMGT references:

[1] R. Antonacci, et al. Mol. Immunol. 45(2):493-509 (2008). PMID:17673294
[2] R. Antonacci, et al. Cytogenet. Cell Genet. 94(1-2):82-83 (2001). PMID:11701960

More information:

See also (IMGT Scientific chart):

Created:: 02/04/2019
Last updated:: 22/09/2023
Authors:: Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: sheep (Ovis aries) TRBC