IMGT Repertoire (IG and TR)
Locus in genome assembly: Atlantic salmon (Salmo salar) IGH locus on chromosome 6 (locus A - Salsal ssa06)
Atlantic salmon (Salmo salar) IGH locus on chromosome 6 (locus A - Salsal ssa06)
| IMGT locus | IGH locus |
|---|---|
| IMGT locus ID: Salsal_IGH_1 | |
| Taxonomy | Salmo salar (Atlantic salmon), taxon:8030 |
| Genome assembly | |
| GenBank assembly ID | |
| RefSeq assembly ID | |
| BAC library | CHORI-214 (1) [1] |
| Chromosome | 6 |
| Chromosome sequence ID and locus positions (GenBank assembly) | |
| Chromosome sequence ID and locus positions (RefSeq assembly) | |
| IMGT locus orientation on the chromosome | REV |
| IMGT/LIGM-DB locus reference sequence (ID) | GU129139 |
| IMGT/LIGM-DB locus reference sequence length (bp) | 931200 |
Atlantic salmon (Salmo salar) IGH locus on chromosome 3 (locus B - Salsal ssa03)
| IMGT locus | IGH locus |
|---|---|
| IMGT locus ID: Salsal_IGH_2 | |
| Taxonomy | Salmo salar (Atlantic salmon), taxon:8030 |
| Genome assembly | |
| GenBank assembly ID | |
| RefSeq assembly ID | |
| BAC library | CHORI-214 (1) [1] |
| Chromosome | 3 |
| Chromosome sequence ID and locus positions (GenBank assembly) | |
| Chromosome sequence ID and locus positions (RefSeq assembly) | |
| IMGT locus orientation on the chromosome | FWD |
| IMGT/LIGM-DB locus reference sequence (ID) | GU129140 |
| IMGT/LIGM-DB locus reference sequence length (bp) | 1063283 |
IMGT notes:
- (1) Atlantic salmon BAC library (CHORI-214), constructed from a Norwegian aquaculture Male strain, was obtained from BACPAC Resources, Children's Hospital Oakland Research Institute (CHORI)
IMGT references:
- [1] Thorsen J. et al. BMC Genomics. 2005, 4;6:50. doi: 10.1186/1471-2164-6-50. PMID:15807896
More information:
See also:
- Created:
- 14/01/2019
- Last updated:
- 22/09/2023
- Authors:
- Saida Hadi-Saljoqi
