Correspondence between IMGT gene names and clone names is available in Gene tables: bovine (Bos taurus)
Correspondence between the different gene nomenclatures
Bovine IGHD genes are listed from 5' (top of the table) to 3' (bottom of the table).
IMGT gene name [1] (1) |
Ma et al. [2] |
Koti et al. [3] |
IGHD1-1 |
DH1.1 |
|
IGHD2-1 |
DH2.1 |
|
IGHD3-1 |
DH3.1 |
DH4/DH4(2) (2) |
IGHD4-1 |
DH4 |
DH8 |
IGHD9-1 |
DQ52.1 |
DHQ52 (3) |
IGHD1-2 |
DH1.2 |
|
IGHD2-2 |
DH2.2 |
|
IGHD5-2 |
DH5.1 |
DH1 |
IGHD8-2 |
DH8 |
DH2 |
IGHD6-2 |
DH6.1 |
DH3 |
IGHD1-3 |
DH1.3 |
|
IGHD2-3 |
DH2.3 |
|
IGHD3-3 |
DH3.2 |
DH4/DH4(2) (2) |
IGHD7-3 |
DH7.1 |
DH5 |
IGHD5-3 |
DH5.2 |
DH6 (4) |
IGHD6-3 |
DH6.2 |
DH7 (5) |
IGHD1-4 |
DH1.4 |
|
IGHD2-4 |
DH2.4 |
|
IGHD3-4 |
DH3.3 |
DH4/DH4(2) (2) |
IGHD7-4 |
DH7.2 |
|
IGHD5-4 |
DH5.3 |
DH6 (4) |
IGHD6-4 |
DH6.3 |
DH7 (5) |
IGHD9-4 |
DQ52.2 |
DHQ52 (3) |
IMGT notes:
- (1) Bos taurus IGHD genes owing to their organization, different from that of Homo sapiens IGHD genes [4-5], are designated by a number of the subgroup (1 to 9), followed by an hyphen and a number for the cluster (1 to 4) from 5' to 3' in the locus.
- (2) The D-REGION of DH4/DH4(2) has 100% identity with the D-REGION of IGHD3-1*01, IGHD3-3*01 and IGHD3-4*01. The chromosomal localization of DH4/DH4(2) being not known, it is not possible to assign with certainty DH4/DH4(2) to one of these three IGHD genes.
- (3) The D-REGION of DHQ52 has 100% identity with the D-REGION of IGHD9-1*01 and IGHD9-4*01. The chromosomal localization of DHQ52 being not known, it is not possible to assign with certainty DHQ52 to one of these two IGHD genes.
- (4) The D-REGION of DH6 has 100% identity with the D-REGION of IGHD5-3*01 and IGHD5-4*01. The chromosomal localization of DH6 being not known, it is not possible to assign with certainty DH6 to one of these two IGHD genes.
- (5) The D-REGION of DH7 has 100% identity with the D-REGION of IGHD6-3*01 and IGHD6-4*01. The chromosomal localization of DH7 being not known, it is not possible to assign with certainty DH7 to one of these two IGHD genes.
IMGT references:
- [1] Lefranc M-P., Immunoglobulin (IG) and T cell receptor genes (TR): IMGT® and the birth and rise of immunoinformatics. Front Immunol., 5:22 (2014). PMID:24600447
- [2] Ma, L. et al., J. Immunol., 196 (10), 4358-4366 (2016). PMID:27053761
- [3] Koti, M. et al., Mol Immunol., 47 (11-12), 2119-28 (2010). PMID:20435350
- [4] Lefranc M.-P. Exp.Clin.Immunogenet., 18, 100-116 (2001). PMID:11340299
- [5] Lefranc M.-P. and Lefranc G. The Immunoglobulin FactsBook, Academic Press, Harcourt, 458 pages (2001). 012441351X
- Created:
- 09/05/2017
- Last updated:
- 26/07/2017
- Authors:
- Perrine Pégorier and Marie-Paule Lefranc