IMGT Repertoire (IG and TR)
Correspondence between nomenclatures: Mouse (Mus musculus) TRAV
Citing this page:
Bosc, N. and Lefranc, M.-P., Dev. Comp. Immunol., 27, 465-497 (2003)
PMID: 12697305
UPDATE: 30/04/2003
UPDATE: 30/04/2003
Correspondence between IMGT gene names and clone names is available in Gene tables: Mouse (Mus musculus)
Correspondence between the different gene nomenclatures
Mouse TRAV genes are listed from 3' (top of the table) to 5' (bottom of the table) in the TRA/TRD locus.
In this table are reported the 10 TRAV/DV genes identified so far:
- Eight TRAV/DV genes (TRAV4-4/DV10, TRAV6-7/DV9, TRAV13-4/DV7, TRAV14D-3/DV8, TRAV15D-1/DV6D-1, TRAV15-1/DV6-1, TRAV16D/DV11 and TRAV21/DV12) which have been found rearranged to TRAJ genes and to (D)J-GENEs of the TRD locus.
- TRAV15-2/DV6-2 and TRAV15D-2/DV6D-2, which are assigned to the TRAV15 subgroup on the basis of sequence alignment, although they have not yet been found rearranged to TRAJ genes.
| IMGT gene name [1-2] (1) | Arden, B. et al. [4] | Lee, I.Y. et al.[3] |
|---|---|---|
| TRAV23 | TRAV23P | |
| TRAV22 | TRAV22P | |
| TRAV21/DV12 | AV6S1/DV6S2 | TRADV21 |
| TRAV20 | AV16S2P | TRAV20P |
| TRAV19 | AV20S1 | TRAV19 |
| TRAV18 | TRAV18 | |
| TRAV17 | AV9S2 | TRAV17 |
| TRAV13-5 | TRAV13-5 | |
| TRAV12-4 | TRAV12-4P | |
| TRAV3-4 | TRAV3-4 | |
| TRAV15-3 | TRAV15-3P | |
| TRAV14-3 | AV2S3 | TRAV14-3 |
| TRAV13-4/DV7 | DV10S7 | TRADV13-4 |
| TRAV16 | AV17S3 | TRAV16 |
| TRAV8-2 | TRAV8-2 | |
| TRAV13-3 | AV10S5 | TRAV13-3 |
| TRAV7-6 | AV1S5 | TRAV7-6 |
| TRAV6-7/DV9 | DV4S8 | TRAV6-7 |
| TRAV5-4 | AV13S2 | TRAV5-4 |
| TRAV4-4/DV10 | ADV11S5 | TRADV4-4 |
| TRAV9-4 | AV3S1 | TRAV9-4 |
| TRAV3-3 | AV5S1/AV5S2 | TRAV3-3 |
| TRAV15-2/DV6-2 | DV7S4 | TRDV15-2 |
| TRAV14-2 | AV2S1/AV2S9 | TRAV14-2 |
| TRAV13-2 | AV10S1 | TRAV13-2 |
| TRAV12-3 | AV8S2/AV8S10 | TRAV12-3 |
| TRAV5-3 | TRAV5-3P | |
| TRAV9-3 | AV3S7 | TRAV9-3 |
| TRAV12-2 | AV8S13 | TRAV12-2 |
| TRAV5-2 | TRAV5-2P | |
| TRAV4-3 | AV11S4 | TRAV4-3 |
| TRAV9-2 | TRAV9-2 | |
| TRAV3-2 | TRAV3-2P | |
| TRAV15-1/DV6-1 | ADV7S2 | TRADV15-1 |
| TRAV14-1 | AV2S2/AV2S7 | TRAV14-1 |
| TRAV13-1 | AV10S8 | TRAV13-1 |
| TRAV12-1 | AV8S4/AV8S7/AV8S9/AV8S11 | TRAV12-1 |
| TRAV7-5 | TRAV7-5 | |
| TRAV11 | AV14S2 | TRAV11 |
| TRAV6-6 | AV4S4 | TRAV6-6 |
| TRAV10 | AV15S1 | TRAV10 |
| TRAV6-5 | TRAV6-5 | |
| TRAV9-1 | TRAV9-1 | |
| TRAV8-1 | TRAV8-1 | |
| TRAV7-4 | AV1S4 | TRAV7-4 |
| TRAV6-4 | TRAV6-4 | |
| TRAV7-3 | AV1S1 | TRAV7-3 |
| TRAV6-3 | TRAV6-3 | |
| TRAV4-2 | AV11S2 | TRAV4-2 |
| TRAV7-2 | TRAV7-2 | |
| TRAV15D-3 | TRAV15D-3P | |
| TRAV14D-3/DV8 | DV2S8 | TRADV14D-3 |
| TRAV13D-4 | AV10S3 | TRAV13D-4 |
| TRAV16D/DV11 | AV17S1/ADV17S2 | TRADV16D |
| TRAV8D-2 | TRAV8D-2 | |
| TRAV13D-3 | TRAV13D-3 | |
| TRAV7D-6 | TRAV7D-6 | |
| TRAV6D-7 | AV4S9 | TRAV6D-7 |
| TRAV5D-4 | AV13S1 | TRAV5D-4 |
| TRAV4D-4 | AV11S1/AV11S6 | TRAV4D-4 |
| TRAV9D-4 | AV3S2/AV3S5 | TRAV9D-4 |
| TRAV3D-3 | TRAV3D-3 | |
| TRAV15D-2/DV6D-2 | DV7S5 | TRADV15D-2 |
| TRAV14D-2 | TRAV14D-2 | |
| TRAV13D-2 | AV10S6 | TRAV13D-2 |
| TRAV12D-3 | AV8S6/AV8S14 | TRAV12D-3 |
| TRAV5D-3 | TRAV5D-3P | |
| TRAV9D-3 | AV3S3 | TRAV9D-3 |
| TRAV12D-2 | AV8S3/AV8S5 | TRAV12D-2 |
| TRAV5D-2 | TRAV5D-2P | |
| TRAV4D-3 | AV11S3/AV11S7 | TRAV4D-3 |
| TRAV9D-2 | AV3S6 | TRAV9D-2 |
| TRAV3D-2 | TRAV3D-2P | |
| TRAV15D-1/DV6D-1 | ADV7S1/DV7S6 | TRADV15D-1 |
| TRAV14D-1 | AV2S4 | TRAV14D-1 |
| TRAV13D-1 | AV10S2/AV10S9 | TRAV13D-1 |
| TRAV12D-1 | AV8S1/AV8S8/AV8S12/AV8S15 | TRAV12D-1 |
| TRAV7D-5 | TRAV7D-5 | |
| TRAV11D | AV14S1 | TRAV11D |
| TRAV6D-6 | AV4S3/AV4S7/AV4S10 | TRAV6D-6 |
| TRAV10D | TRAV10D | |
| TRAV6D-5 | AV4S2 | TRAV6D-5 |
| TRAV9D-1 | AV3S4/AV3S8 | TRAV9D-1 |
| TRAV8D-1 | AV18S1 | TRAV8D-1 |
| TRAV7D-4 | AV1S2/AV1S8 | TRAV7D-4 |
| TRAV6D-4 | TRAV6D-4 | |
| TRAV7D-3 | AV1S3/AV1S6 | TRAV7D-3 |
| TRAV6D-3 | AV4S6/AV4S12 | TRAV6D-3 |
| TRAV4D-2 | TRAV4D-2P | |
| TRAV7D-2 | AV1S7 | TRAV7D-2 |
| TRAV6-2 | AV4S5 | TRAV6-2 |
| TRAV7-1 | TRAV7-1 | |
| TRAV6-1 | AV4S11 | TRAV6-1 |
| TRAV5-1 | TRAV5-1 | |
| TRAV4-1 | TRAV4-1P | |
| TRAV3-1 | AV5S3 | TRAV3-1 |
| TRAV2 | AV12S1 | TRAV2 |
| TRAV1 | AV19S1 | TRAV1 |
Correspondence between the different subgroup nomenclatures
| IMGT subgroup [1] | Arden et al. [5] Wilson et al. [6] (2) |
Wang et al. [7] | Arden et al. [4] | Lee et al. [3] |
|---|---|---|---|---|
| TRAV1 | 17 | 19 | 1 | |
| TRAV2 | 12 | 12 | 12 | 2 |
| TRAV3 | 5 | 5 | 5 | 3 |
| TRAV4 | 11 | 11 | 11 | 4 |
| TRAV5 | 18 | 13 | 5 | |
| TRAV6 | 4 | 4 | 4 | 6 |
| TRAV7 | 1 | 1 | 1 | 7 |
| TRAV8 | 15 | 18 | 8 | |
| TRAV9 | 3 | 3 | 3 | 9 |
| TRAV10 | 21 | 15 | 10 | |
| TRAV11 | 14 | 14 | 11 | |
| TRAV12 | 8 | 8 | 8 | 12 |
| TRAV13 | 10 | 10 | 10 | 13 |
| TRAV14 | 2 | 2 | 2 | 14 |
| TRAV15 | 7 | 7 | 7 | 15 |
| TRAV16 | 16 | 17 | 16 | |
| TRAV17 | 9 | 17 | ||
| TRAV18 | 18 | |||
| TRAV19 | 20 | 20 | 19 | |
| TRAV20 | 19 | 16 | 20 | |
| TRAV21 | 6 | 6 | 6 | 21 |
| TRAV22 | 22 | |||
| TRAV23 | 23 |
IMGT notes:
- (1) Mouse TRAV genes are designated by a number for the subgroup followed, whenever there are several genes belonging to the same subgroup, by a hyphen and a number for their relative localization in the TRA/TRD locus.
- (2) Subgroups 1 to 10 according to [5].
IMGT references:
- [1] Bosc, N. and Lefranc, M.-P., Dev. Comp. Immunol., 27, 465-497 (2003), LIGM: 271.. PMID:12697305
- [2] Glusman, G. et al., Immunity, 15, 337-349 (2001). PMID:11567625
- [3] Lee, I.Y. et al., unpublished (1998).
- [4] Arden, B. et al., Immunogenetics, 42, 501-530 (1995). PMID:8550093
- [5] Arden B. et al., Nature, 316, 783-787 (1985). PMID:3839904
- [6] Wilson, R.K. et al., Immunological Reviews 101, 149-172 (1988). PMID:2965094
- [7] Arden, B. et al., Immunogenetics, 42, 501-530 (1995). PMID:8034314
More information:
- Created:
- 04/04/2001
- Last updated:
- 22/09/2023
- Authors:
- Nathalie Bosc, Yan Wu and Marie-Paule Lefranc
