IMGT Repertoire (RPI)
Alignment of alleles: Mouse PRETA1
___________________________________________________________________________________________________________________________________ Accession Allele EXON 1 number name ___________________________________________________________________________________________________________________________________ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 M A R T W L L L L L G V R C Q A L P S U27268 , PRETA1*01 (EX1) ATG GCT AGG ACA TGG CTG CTG CTG CTT CTG GGC GTC AGG TGT CAG GCC CTA CCA TCA G U16958 , PRETA1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- --- -
___________________________________________________________________________________________________________________________________ Accession Allele EXON 2 number name ___________________________________________________________________________________________________________________________________ 1.5 1.4 1.3 1.2 1.1 1 2 3 4 5 6 7 8 9 10 11 G I A G T P F P S L A P P I T L U27268 , PRETA1*01 (EX2) GC ATC GCT GGC ACC CCC TTT CCG TCT CTG GCT CCA CCC ATC ACA CTG U16958 , PRETA1*02 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- _____AB_____ ________ 15.1 15.3 12 13 14 15 15.2 16 17 18 19 20 21 22 23 24 25 26 27 28 L V D G R Q H M L V V C L V L D A U27268 , PRETA1*01 CTG GTA GAT GGA ... ... ... AGG CAG CAC ATG CTG GTG GTT TGC CTG GTC CTC GAT GCG U16958 , PRETA1*02 (cDNA) --- --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- _______________BC_______________ _________CD_________ 45.1 45.3 45.5 29 30 31 32 33 34 35 36 39 40 41 42 43 44 45 45.2 45.4 A P P G L D N P V W F S A G N G S A L U27268 , PRETA1*01 GCA CCC CCT ... GGC CTT GAC AAC CCT GTC TGG TTC TCA GCT GGC AAT GGC AGT GCC CTA U16958 , PRETA1*02 (cDNA) --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ________ ___________________DE___________________ 45.7 84.1 84.3 84.5 84.7 85.6 45.6 77 78 79 80 81 82 83 84 84.2 84.4 84.6 85.7 85.5 D A F T Y G P S L A P D U27268 , PRETA1*01 ... ... GAC GCC TTC ACC TAT GGG CCC TCT CTG GCA CCG GAC ... ... ... ... ... ... U16958 , PRETA1*02 (cDNA) ... ... --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ________________ ___EF___ 85.4 85.2 96.1 85.3 85.1 85 86 87 88 89 90 91 92 93 94 95 96 96.2 97 98 G T W T S L A Q L S L P S E E L E A U27268 , PRETA1*01 GGC ACC TGG ACT AGC CTG GCC CAG CTC TCC TTG CCT TCT GAA GAG CTG ... ... GAA GCC U16958 , PRETA1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... --- --- _______________________FG___________________________ 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 W E P L V C H T R P G A G G Q N R S T U27268 , PRETA1*01 TGG GAG CCC TTG GTC TGT CAC ACC AGG CCT GGG GCT ... GGG GGA CAG AAC CGG AGC ACA U16958 , PRETA1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- 119 120 121 122 123 124 H P L Q L S U27268 , PRETA1*01 CAC CCC CTC CAG CTG TCA G U16958 , PRETA1*02 (cDNA) --- --- --- --- --- --- -
___________________________________________________________________________________________________________________________________
Accession Allele EXON 3
number name
___________________________________________________________________________________________________________________________________
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
G E S S T A R S C F P E P L G
U27268 , PRETA1*01 (EX3) GG GAA TCT TCG ACA GCC AGG AGC TGC TTT CCG GAG CCT CTC GGG G
U16958 , PRETA1*02 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
___________________________________________________________________________________________________________________________________
Accession Allele EXON 4
number name
___________________________________________________________________________________________________________________________________
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
G T Q R Q V L W L S L L R L L L F K L L
U27268 , PRETA1*01 (EX4) GG ACA CAG CGG CAG GTA CTG TGG CTG AGC CTA CTG CGC CTG CTC CTC TTC AAA CTG CTT
U16958 , PRETA1*02 (cDNA) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
L L D V L L T C S H L R L H V L A G Q H
U27268 , PRETA1*01 CTG CTC GAT GTG CTC CTG ACC TGC AGC CAC CTC CGC CTC CAT GTG CTG GCG GGC CAG CAC
U16958 , PRETA1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58
L Q P P P S R K S L P P T H R I W T *
U27268 , PRETA1*01 CTC CAG CCA CCA CCC TCA CGC AAG TCC CTG CCT CCC ACC CAC AGA ATT TGG ACA
U16958 , PRETA1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Legend:
- When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
- Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence.
- Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Exon names are shown between parentheses on the first line.
- Cysteine involved in the disulfide bridge are shown in purple.
- STOP-CODON is indicated by an asterisk.
- N-glycosylation sites (NXS/T, where X is different from P) are underlined.
See also:
- IMGT Repertoire:
- IMGT Scientific chart:
- IMGT Index:
- IMGT Education (FR):
- Tools:
Created: 30/04/2003
Last updated:
Author: Dominique Scaviner
Editor: Elodie Gemrot
Last updated:
Author: Dominique Scaviner
Editor: Elodie Gemrot
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