IMGT Repertoire (RPI)

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Other VSIG4 entries

Homo sapiens: VSIG4

IMGT RPI entry from gene to protein for Mus musculus VSIG4

Citing IMGT RPI entry for VSIG4

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004)

with permission from Research Signpost

IMGT gene name and definition

IMGT gene name: Mus musculus VSIG4
IMGT gene definition: V-set and immunoglobulin domain containing 4

Chromosomal localization

Chromosome: X
Chromosomal localization: X C3

Gene exon/intron organization

Legend:

Length of the exons and introns are in base pairs.
Colors are according to IMGT Color menu for regions and domains

Number of alleles: 1

IMGT reference alleles

Allele names	Gene functionality	IMGT reference sequences
Allele names	Gene functionality	Exons	Accession numbers	Molecule type
VSIG4*01	F	EX1-7	AL831708	gDNA

IMGT reference sequences (in FASTA format) for the allele(s): VSIG4*01

Nucleotide sequence in FASTA format with gaps according to the IMGT unique numbering
Amino acid sequence in FASTA format with gaps according to the IMGT unique numbering
Nucleotide sequence in FASTA format without gaps
Amino acid sequence in FASTA format without gaps

Other sequences from the literature

Allele names	Gene functionality	IMGT reference sequences
Allele names	Gene functionality	Exons	Accession numbers	Molecule type
VSIG4*01	F	EX1-7	AK041014	cDNA
			BC025105	cDNA
			NM_177789	cDNA

Corresponding protein database accession numbers

Allele names	Accession numbers		Number of amino acids	Protein isoform
Allele names	Nucleotide databases	Protein databases	Number of amino acids	Protein isoform
VSIG4*01	AL831708	Tr:Q80WA3	280 aa	1
VSIG4*01	NM_177789	NP_808457	280 aa	1

IMGT notes:

(1) Mouse VSIG4 lack the sequence corresponding to the human C-LIKE-DOMAIN.

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

VSIG4*01: CQ789650(g)

Nucleotide sequence

1        atggagatct catcaggctt gctgttcctg ggccacctaa tagtgctcac ctatggccac

61       cccaccctaa aaacacctga gagtgtgaca gggacctgga aaggagatgt gaagattcag

121      tgcatctatg atcccctgag aggctacagg caagttttgg tgaaatggct ggtaagacac

181      ggctctgact ccgtcaccat cttcctacgt gactccactg gagaccatat ccagcaggca

241      aagtacagag gccgcctgaa agtgagccac aaagttccag gagatgtgtc cctccaaata

301      aataccctgc agatggatga caggaatcac tatacatgtg aggtcacctg gcagactcct

361      gatggaaacc aagtaataag agataagatc attgagctcc gtgttcggaa atataatcca

421      cctagaatca atactgaagc acctacaacc ctgcactcct ctttggaagc aacaactata

481      atgagttcaa cctctgactt gaccactaat gggactggaa aacttgagga gaccattgct

541      ggttcaggga ggaacctgcc aatctttgcc ataatcttca tcatctccct ttgctgcata

601      gtagctgtca ccatacctta tatcttgttc cgctgcagga cattccaaca agagtatgtc

661      tatggagtga gcagggtgtt tgccaggaag acaagcaact ctgaagaaac cacaagggtg

721      actaccatcg caactgatga accagattcc caggctctga ttagtgacta ctctgatgat

781      ccttgcctca gccaggagta ccaaataacc atcagatcaa caatgtctat tcctgcctgc

841      tga

Nucleotide sequence in FASTA format (without gaps) VSIG4*01

Amino acid sequence

1        MEISSGLLFL GHLIVLTYGH PTLKTPESVT GTWKGDVKIQ CIYDPLRGYR QVLVKWLVRH

61       GSDSVTIFLR DSTGDHIQQA KYRGRLKVSH KVPGDVSLQI NTLQMDDRNH YTCEVTWQTP

121      DGNQVIRDKI IELRVRKYNP PRINTEAPTT LHSSLEATTI MSSTSDLTTN GTGKLEETIA

181      GSGRNLPIFA IIFIISLCCI VAVTIPYILF RCRTFQQEYV YGVSRVFARK TSNSEETTRV

241      TTIATDEPDS QALISDYSDD PCLSQEYQIT IRSTMSIPAC *

Amino acid sequence in FASTA format (without gap) VSIG4*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.

IMGT links

IMGT Repertoire

Chromosomal localization:
Alignment of alleles:
Protein displays:
IMGT Collier de perles: V-LIKE-DOMAIN

External links

Nomenclature

HGNC:

Genome database

Entrez Gene: 11326
GENATLAS:
GeneCards:
GDB:
OMIM:

Sequence database

EMBL: AL831708, AK041014, BC025105
GenBank: AL831708, AK041014, BC025105
DDBJ: AL831708, AK041014, BC025105
Swiss-Prot:
TrEMBL: Q80WA3
NCBI: NM_177789, NP_808457

Structure database

PDB: