IMGT reference directory alignments in CLUSTAL format (IMGT-Align) (IG and TR)

The IMGT reference directory alignments in CLUSTAL format are constituted by sets of Immunoglobulin (IG) or T cell Receptor (TR) sequences of the IMGT reference directory, submitted to IMGT-Align and EMBL-Align, using the Webin-Align tool [1]. IMGT-Align accession numbers and flat files are identical to those of EMBL-Align

• Alignments are based on the Alignments of alleles (IMGT Repertoire), with gaps according to the IMGT unique numbering.

• Each alignment is available in two presentations:
  IMGT-Align flat file: .dat
  IMGT-Align alignment: .aln.

• The ClustalW format imposes some technical constraints such as a length lower than 10 characters for gene names. Check in the flat file comment lines (CC) for explanation of unusual gene name abbreviations.

IGHV:	Human	ALIGN_000425.dat ALIGN_000425.aln	TRAV:	Human	ALIGN_000306.dat ALIGN_000306.aln
	Mouse	ALIGN_000439.dat ALIGN_000439.aln		Mouse	ALIGN_000445.dat ALIGN_000445.aln
IGHD:	Human	ALIGN_000300.dat ALIGN_000300.aln	TRAJ:	Human	ALIGN_000308.dat ALIGN_000308.aln
	Mouse	ALIGN_000433.dat ALIGN_000433.aln		Mouse	ALIGN_000424.dat ALIGN_000424.aln
IGHJ:	Human	ALIGN_000298.dat ALIGN_000298.aln	TRBV:	Human	ALIGN_000302.dat ALIGN_000302.aln
	Mouse	ALIGN_000421.dat ALIGN_000421.aln		Mouse	ALIGN_000440.dat ALIGN_000440.aln
IGKV:	Human	ALIGN_000321.dat ALIGN_000321.aln	TRBD:	Human	ALIGN_000319.dat ALIGN_000319.aln
	Mouse	ALIGN_000434.dat ALIGN_000434.aln		Mouse	ALIGN_000441.dat ALIGN_000441.aln
IGKJ:	Human	ALIGN_000322.dat ALIGN_000322.aln	TRBJ:	Human	ALIGN_000303.dat ALIGN_000303.aln
	Mouse	ALIGN_000422.dat ALIGN_000422.aln		Mouse	ALIGN_000442.dat ALIGN_000442.aln
IGLV:	Human	ALIGN_000420.dat ALIGN_000420.aln	TRGV:	Human	ALIGN_000191.dat ALIGN_000191.aln
	Mouse	ALIGN_000435.dat ALIGN_000435.aln		Mouse	ALIGN_000444.dat ALIGN_000444.aln
IGLJ:	Human	ALIGN_000292.dat ALIGN_000292.aln	TRGJ:	Human	ALIGN_000291.dat ALIGN_000291.aln
	Mouse	ALIGN_000423.dat ALIGN_000423.aln		Mouse	ALIGN_000438.dat ALIGN_000438.aln
			TRDV:	Human	ALIGN_000305.dat ALIGN_000305.aln
				Mouse	ALIGN_000443.dat ALIGN_000443.aln
			TRDD:	Human	ALIGN_000320.dat ALIGN_000320.aln
				Mouse	ALIGN_000436.dat ALIGN_000436.aln
			TRDJ:	Human	ALIGN_000307.dat ALIGN_000307.aln
				Mouse	ALIGN_000437.dat ALIGN_000437.aln

Reference:
[1] Lombard, V. and al. Bioinformatics, 18, 763-764 (2002).

Acknowlegments:
The first alignments were submitted to EMBL-Align by the students of the DESS Bioinformatique, Université Montpellier II (March 2002) and reviewed by Céline Protat (April 2002 - August 2002).

Created: 24/09/2002
Last updated: Friday, 22-Sep-2023 18:22:39 CEST
Author: Céline Protat

IMGT Home page | IMGT Repertoire (IG and TR) | IMGT Repertoire (MH) | IMGT Repertoire (RPI) | IMGT Index | IMGT Scientific chart | IMGT Education | IMGT Latest news

© Copyright 1995-2025 IMGT®, the international ImMunoGeneTics information system® | Terms of use | About us | Contact us | Citing IMGT