IMGT reference directory: D-REGION Chondrichthyes IGHD set

The IMGT reference directory contains sets of allele sequences isolated from the IMGT reference sequences. By definition, these sets contain one sequence for each allele.

Authors: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

Species are designated with "short" names (the three first letters from the genus and species names):

for Leucoraja erinacea (Little skate): Leueri
for Raja eglanteria (Clearnose skate): Rajegl
for Carcharhinus leucas (Bull shark): Carleu
for Carcharhinus plumbeus (Sandbar shark): Carplu
for Heterodontus francisci (Horned shark): Hetfra
for Hydrolagus colliei (Spotted ratfish): Hydcol
for Ginglyomostoma cirratum (Nurse shark): Gincir
for Orectolobus maculatus (Spotted wobbegong shark) : Oremac



>X15124_IGHD1*01_Leueri
TACAACAGTGGGT
>X15124_IGHD2*01_Leueri
TATACTGG
>X15125_IGHD3*01_Leueri
ACAGATCAACAGGGGGCAGATGA
>X16146_IGHD4*01_Leueri
CATGTGGGGT
>X16146_IGHD5*01_Leueri
CTATAGTAC
>M29672_IGHD6*01_Leueri
GCAGCCATGGGGGGCTCTATATAC
>M29679_IGHD7*01_Leueri
AGAGGGACAACAATGATC
>U08009_IGHD1*01_Rajegl
ACTATATGGGTGG
>U08009_IGHD2*01_Rajegl
ATACTGGCC
>U08010_IGHD3*01_Rajegl
TCCCCCTATATGGGTGGAGACGAG
>U08012_IGHD4*01_Rajegl
ACTATATGGGTGG
>U08012_IGHD5*01_Rajegl
ACTATACTGGTACCT
>AF336087_IGHD1*01_Oremac
TACAGGGACACCAGATACGATAGGGAGTGTTACGATTGGGAGGTAC
>AF336088_IGHD2*01_Oremac
TTCTCTTTCATGGTTTATGGTCTCAGCTGCTACGGAGGA
>AF336089_IGHD3*01_Oremac
TGGGGCGAGAAGCCTCGGTATGGCGAAACCCGATATGCTTGCAACGGA
>AF336090_IGHD4*01_Oremac
TATATGATCGGCTACTCTGGGGATAGATGCTCGGAGTATAACTGGAGT
>AF336091_IGHD5*01_Oremac
TTGGCTACTCTGACTGCTCCGTACGAGCAACTGTACTCC
>AF336092_IGHD6*01_Oremac
TATGTTATAGCTACGATGGCACCTCTCTGCTACGCCAGCTATAGCTGG
>AF336093_IGHD7*01_Oremac
TGTGGGTATATCACTACCATAACTTTCCGCTGTGATGGAAGA
>AF336094_IGHD8*01_Oremac
TTTCGTCCGTTTATTCTGTACTGTAATGGTTAGAAGCGTTATCCG
>AF003840_IGHD1*01_Hydcol
GATACAGTGGGT
>AF003840_IGHD2*01_Hydcol
GTATACATGGAC
>AF003946_IGHD3*01_Hydcol
GGGTACAATGTATACAGTGTGTACACTGGAGTACTCATT
>AF003839_IGHD4*01_Hydcol
GAGATTCTAACTACGGGGTGGGAT
>AF004359_IGHD5*01_Hydcol
GGGTACAATGTATACAGTGTGTACACTGGAGTACTCATT
>AF004360_IGHD6*01_Hydcol
GGGTACAATGTATACAGTGTGTACACTGGAGTACTCAAT
>AF003853_IGHD7*01_Hydcol
GCCCGACAGTGGATACGTATAGAT
>AF003841_IGHD8*01_Hydcol
CTGTTTGAGGCGGGAAG
>AF003841_IGHD9*01_Hydcol
TATACGGGGCT
>AF003854_IGHD10*01_Hydcol
GATCGGGACACAGTGGGTAGCCGGAGGGGGTCG
>AF003855_IGHD11*01_Hydcol
GCGGATCGGGGTGGACAA
>AF003856_IGHD12*01_Hydcol
TATACAGTGGGTACCCGA
>AF003857_IGHD13*01_Hydcol
GAGAGTGGGTACCGAGAACTACGGATT
>AF003858_IGHD14*01_Hydcol
GACCACAGTAGGGGGAACCCAAAC
>AF003859_IGHD15*01_Hydcol
GGCCCCCACACAGTCGATTTCGGA
>AF003860_IGHD16*01_Hydcol
TTGATC
>AF003861_IGHD17*01_Hydcol
GATCCTGGGTCCGAC
>X13447_IGHD1*01_Hetfra
GGTACAGCAGTGGGT
>X13447_IGHD2*01_Hetfra
ATATCTGGGTGG
>X13449_IGHD3*01_Hetfra
GCCGGTACAGCAGTGCGTACAAGCATT
>Z11777_IGHD4*01_Hetfra
GGTACAGCGGTGGGT
>Z11777_IGHD5*01_Hetfra
ATATACTGGATGG
>Z11778_IGHD6*01_Hetfra
GGTACAGCAGTGGGT
>Z11779_IGHD7*01_Hetfra
ATATACTGGATGG
>Z11776_IGHD8*01_Hetfra
GGTACTACAGTGGGTAT
>Z11776_IGHD9*01_Hetfra
TTATACTGGGTGG
>X13448_IGHD10*01_Hetfra
AACATTACTACATTGGGTACA
>X15171_IGHD11*01_Hetfra
GGTACAGCAGTGGGT
>X15174_IGHD12*01_Hetfra
ATATACTGGATGG
>Z11781_IGHD13*01_Hetfra
CGGGCGCGTACACCGTACTGGG
>Z11782_IGHD14*01_Hetfra
AAGTACAGCGGCGGGATACAACAA
>Z11783_IGHD15*01_Hetfra
TGGTGCGGACCGAT
>Z11784_IGHD16*01_Hetfra
TGGGGCGATGGACAATACTGGA
>Z11785_IGHD17*01_Hetfra
GGCGGTGGGTCTGGGA
>Z11786_IGHD18*01_Hetfra
AGTACAGCGGTCCATATCGG
>Z11787_IGHD19*01_Hetfra
CGGGCAACAGCAGGGCTGGATGG
>Z11788_IGHD20*01_Hetfra
TGGTACAGCAGATT
>Z11789_IGHD21*01_Hetfra
GAGGACAGCGGTGGGAACTGGGGG
>Z11791_IGHD22*01_Hetfra
GAAATACGGTACTATGATGGATATGGGGC
>Z11792_IGHD23*01_Hetfra
GGTACAGTGGGTATATCTCCGGGTGGCG
>X03748_IGHD24*01_Hetfra
CAGAGGAACTAC
>L38965_IGHD1*01_Gincir
ATAACTGGGATTGA
>L38965_IGHD2*01_Gincir
TTACTGTGAATAC
>L38965_IGHD3*01_Gincir
TGATATGCTGTCGA
>L38966_IGHD4*01_Gincir
ATAACTTTACTGTGGATAG
>L38966_IGHD5*01_Gincir
TGCTGAGCTGGAGA
>L38967_IGHD6*01_Gincir
ATAACTGGGATTGA
>L38967_IGHD7*01_Gincir
TTACTGTGAATAC
>L38967_IGHD8*01_Gincir
TGATATGCTGTCGA
>L38968_IGHD9*01_Gincir
ATAGCTGGTGTGGA
>L38968_IGHD10*01_Gincir
TAGCTGTGACTAC
>L38968_IGHD11*01_Gincir
TGCTGTGCTCTTGA
>M92851_IGHD12*01_Gincir
CGCATGAGTGGGTATGAATACTTGGGCGGCCACTCC
>AF327520_IGHD13*01_Gincir
GGATCGACTGGGTGG
>U18701_IGHD14*01_Gincir
TGGGAAGCTGCTGATATGTGTATGTACGGGGTCTGCACTATTTATCCCTTCTCTGGT
>U18680_IGHD15*01_Gincir
TATAGGAAAAACTGGGCTTATGACTGCGGACTCGAAGAACTCGACTGGATTTATGTA
>U18716_IGHD16*01_Gincir
CGGGGTTCTGGTTATGGGTGCTTCAAATATGAAGTA
>U18717_IGHD17*01_Gincir
GGGGTGTGGGCCGGGGCTTACTGTGGCGAGGTCTGTAAGCTCACGGGC
>U18686_IGHD18*01_Gincir
TCGACCTGGTATACCGATATTGAAGGAGGGGAACTGGGTACCCCTTGTAATCGCCAGCATGATGTT
>U18687_IGHD19*01_Gincir
TCCTTATATAACTGGTGTAGCTGTGAAACAGATGTGCTCCCC
>U18714_IGHD20*01_Gincir
CCATGGGACTATGACTGCAACTACGATGTT
>U18718_IGHD21*01_Gincir
ATATCCTACTGTGACGATGTGGTCTGTGCTGCTAACTATGTT
>U18713_IGHD22*01_Gincir
GCCTGGTATGGGACTGGCTGCGTTATCTGGGGGCGTTTCTTGTATGATGTT
>U18700_IGHD23*01_Gincir
TGCAATGCCTGGTGTGGGGGGGACAAGGGACAGTGTGACTATCGCCTGCTGTGTTCT
>U18702_IGHD24*01_Gincir
GGACAATATCGGGGATGTCCCTACTTTCTGTGCTCTCACCTATCCTATGCTGGA
>U18715_IGHD25*01_Gincir
TGGCAGTGGGGGACCTGTGACGACCGGATCTGTGTTCACAACTCACGTGAC
>U18726_IGHD26*01_Gincir
CTGAGATGCGCATCTTGGTATCTGGATGATGTA
>U18693_IGHD27*01_Gincir
TGGCCTTCCTGGTCGGGCCATGGGTGTGAAAGTGACTGGGCTGTTGGGGGGGCC
>U18725_IGHD28*01_Gincir
GCCGGTACACATTCGGGATGTGCGCTGTGTTCTTTCATCCAAATTGAGGCTACC
>U18685_IGHD29*01_Gincir
TCAGTTGGTGTCATATATGCGCGCTGTCCGCCCTGTGATCGCCAA
>U18688_IGHD30*01_Gincir
GGTATGCTGCATGACTGCGACTGGTCGGACTATGATGTA
>U18724_IGHD31*01_Gincir
GCTTTGGACCGGGGCTATAGTTGTGACTGCTCTGCCCGTCAGGCTCGA
>U18696_IGHD32*01_Gincir
AATACCTATGCTTGTGCGTTTTCTTGCTCTTGGGAC
>U18705_IGHD33*01_Gincir
TGCGTTTCAAGTAGGTGTAGTGATGACTGTGACCACGGGAAGTCCTGTAACCTTGGC
>U18703_IGHD34*01_Gincir
TGCGGGGAATGCAGCTGGTGTGGTGGTAGCTGTGACTGGCTTCTGCTCTCGGGGGGGAATGGT
>U18682_IGHD35*01_Gincir
GACTGTTCGATCCTCGGGACTACCGCCCTGTGTAATCGATATAGTGAA
>U18706_IGHD36*01_Gincir
AACTGCGCTGGTACACCTGTGACTATTATCTGTAACCCTGTC
>U18704_IGHD37*01_Gincir
TGGGCGTATAGTTTCTGTCCTGTGACTACCTTCTGTGCTCTCGATGAGAACTATGAT
>U18681_IGHD38*01_Gincir
GGTTATGTCTGTGACTTCGCGGGCTCTTGTCACGGCGGTGACGAA
>U18684_IGHD39*01_Gincir
GGGCAATAGCTGTGACTACGACCTGTGCTCTTTGGGGTACACT
>U18708_IGHD40*01_Gincir
GGTGATAAAATTGTTGGGACGCCGAGCTGTGACTACCCAAAGCTGTGCTCTTCGGGATATGTTATA
>U18722_IGHD41*01_Gincir
GGGCTAATGGGCTGTGAGTATTGGCTGTGCGAGCCCCGCCATGGT
>U18683_IGHD42*01_Gincir
TCTGAGGCTGAAAACGCCGGCTGTGAATTCGGTTTCCTGTGTACGACTGACCCTTGGGCTGCA
>U18690_IGHD43*01_Gincir
TGCCGCTGGTGTGTGCCCCCCCGCCTC
>U18695_IGHD44*01_Gincir
TTTCGGCAGCTCCCGTGGACGGATTATAGTTGTGACCCGCGTCTGTGCTCCTCTGCGTTTGGT
>U18712_IGHD45*01_Gincir
TATGCCATGCGGTTTTTTGGCCCGACGCCGTGCTCTTGTGACGGC
>U18719_IGHD46*01_Gincir
TTCGGTAATAAGGGGGTGTTGAAGCGCGATAGTTGTGACCGACTCGAGTGCTCTCCCTCTGGT
>U18691_IGHD47*01_Gincir
TGGTGTATGACTGGGAGATCCCCCGCTTACAACTATGATGTA
>U18694_IGHD48*01_Gincir
CAGGGCTGGGAATATAGTGACTACCCCTGTGCTCTTCACCGGAATGTT
>U18720_IGHD49*01_Gincir
TCTCGTAGCTGGTGTGACTGCAATCTCCCCAAT
>U18698_IGHD50*01_Gincir
CGACGCTACAGCTGGTGTGGAGGGAGCTGTGACTACCTCAAACTCGCCGAAGACAACTCCTATGGA
>U18692_IGHD51*01_Gincir
GGGGCCAGGTGTGGATCGTCCGCTGTCGTCCTCTGTACTCTTAAC
>U18707_IGHD52*01_Gincir
GGCAATAGCTGTGACTACGATCTGTGCTCTTTGGGACACACG
>U18699_IGHD53*01_Gincir
GGACCGGCTGGTGTCTGTGGCCGCAACTGCGGAGGTACC
>U18710_IGHD54*01_Gincir
GCAGTGTATCGGCAATGTGCTTACTGGAGTTGTGCCCCGGCGGAA
>U18689_IGHD55*01_Gincir
GCCGACGATGTGGTCGTAAGGTCTAACTACGGGGTCGCCTGCTTGGCGGGATTT
>U18709_IGHD56*01_Gincir
AATTCCTATGCCTGTGACTTCGGGTGTTCTTGGCAC
>U51450_IGHD57*01_Gincir
GGATATCACAGCGGGCATGCTACTCCCTATTAT
>U18697_IGHD58*01_Gincir
GGGATACCTGGTGTGGATCCCTTGTACAGCTGTGATCTGTGCTCTTTACGGGTACCTTATGCTGTA
>U18723_IGHD59*01_Gincir
CTAGCCCAGTTGGGCTGTGACTACGGGTGCTCTTCGCGGTACAACTACTCT
>U50611_IGHD1*01_Carleu
CAGCCAATTTTCCGAGATGGTATACGTTGG
>U50612_IGHD2*01_Carleu
AGTAGCCCCTTCTATGGAGTAGGTAGGGGAATC
>U50613_IGHD3*01_Carleu
GGAGCTGGTTTAGATTCTTTTGGTAGGGCAAATGGGAACT
>U50614_IGHD4*01_Carleu
GGGGCTGACAGGGAG
>U40560_IGHD1*01_Carplu
ATCTATACAGGGGCTCTGGCTTGGGTA
>U50605_IGHD2*01_Carplu
ACCATTACAGGGGAGTTATATTTGGTGTCCGAAGAAACCGTTGTCGCTAGCCCT
>U50604_IGHD3*01_Carplu
GGGGAATACGAGTACTCTACGCCT
>U50607_IGHD4*01_Carplu
CCTCTACAGGCACCATACTGGTTGGAC
>U50606_IGHD5*01_Carplu
ATCCTTGGGGCGCCTATATATTTA
>U50608_IGHD6*01_Carplu
AACCAAGAGGGGTCACACTGGCTACGT
>U50609_IGHD7*01_Carplu
ATCTATACAGGGGCTCTGGTCTTGGGT
>U50610_IGHD8*01_Carplu
ATCTATACAGGGGAACTGGCTTGGGTA

Created: : 31/01/2002
Last updated: 22/07/2003

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