Citing IMGT dynamic tools: Sanou G., Zeitoun G. et al. IMGT® at scale: FAIR, Dynamic and Automated Tools for Immune Locus Analysis, Nucleic Acids Research. 2025;,gkaf1024. doi: 10.1093/nar/gkaf1024 (Free Article) PMID: 41091930.
Program version: v. 

Add information about removed genes/alleles.
May 15th, 2025.

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: A scoring system is employed to indicate the number of IMGT/LIGM-DB reference sequences and other sequences from the literature in which an IG or TR gene allele has been identified and annotated.

Removed genes/alleles
If a gene/allele existence or name has to be changed, the old name or gene/allele would be deleted and its name won't be reused. They are kept in the gene table for historical reasons.
A single star ()
indicates that an IG or TR gene allele is annotated in the reference sequence only.
Two stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in one sequence from the literature.
Three stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in at least two sequences from the literature.
In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Sumatran orangutan (Pongo abelii) IGHD IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)
IGHD1IGHD1-1 IGHD1-1*01 F 14 Susie BK075454✤ [3] MAP 1091046-1091118 AG06213 BK075455✤ [3] 1146013-1146085
AG06213 BK075456✤ [3] 1251860-1251932
AG06213 IMGT000155 [2] 1095376-1095448
AG06213 IMGT000156 [1] 1201222-1201294
IGHD1IGHD1-6 IGHD1-6*01 ORF (1) 14 Susie BK075454✤ [3] MAP 1099152-1099224 AG06213 BK075455✤ [3] 1154120-1154192
AG06213 BK075456✤ [3] 1259967-1260039
AG06213 IMGT000155 [2] 1103483-1103555
AG06213 IMGT000156 [1] 1209329-1209401
IGHD1IGHD1-12 IGHD1-12*01 F 14 Susie BK075454✤ [3] MAP 1108576-1108648 AG06213 BK075455✤ [3] 1163561-1163633
AG06213 BK075456✤ [3] 1269413-1269485
AG06213 IMGT000155 [2] 1112924-1112996
AG06213 IMGT000156 [1] 1218775-1218847
IGHD1IGHD1-18 IGHD1-18*01 F 14 Susie BK075454✤ [3] MAP 1117970-1118042 AG06213 BK075456✤ [3] 1278792-1278864
AG06213 IMGT000156 [1] 1228154-1228226
IGHD1IGHD1-18 IGHD1-18*02 F 14 AG06213 BK075455✤ [3] 1172939-1173011
IGHD1IGHD1-18 IGHD1-18*02 F 14 AG06213 IMGT000155 [2] 1122302-1122374
IGHD1IGHD1-24 IGHD1-24*01 F 14 Susie BK075454✤ [3] MAP 1127375-1127447 AG06213 BK075455✤ [3] 1182344-1182416
AG06213 BK075456✤ [3] 1288196-1288268
AG06213 IMGT000155 [2] 1131707-1131779
AG06213 IMGT000156 [1] 1237558-1237630
IGHD1IGHD1-30 IGHD1-30*01 F 14 Susie BK075454✤ [3] MAP 1137307-1137382 AG06213 BK075455✤ [3] 1192274-1192349
AG06213 BK075456✤ [3] 1298129-1298204
AG06213 IMGT000155 [2] 1141637-1141712
AG06213 IMGT000156 [1] 1247491-1247566
IGHD2IGHD2-7 IGHD2-7*01 F 14 Susie BK075454✤ [3] MAP 1101825-1101911 AG06213 BK075455✤ [3] 1156793-1156879
AG06213 BK075456✤ [3] 1262645-1262731
AG06213 IMGT000155 [2] 1106156-1106242
AG06213 IMGT000156 [1] 1212007-1212093
IGHD2IGHD2-13 IGHD2-13*01 F 14 Susie BK075454✤ [3] MAP 1111231-1111317 AG06213 BK075455✤ [3] 1166215-1166301
AG06213 BK075456✤ [3] 1272068-1272154
AG06213 IMGT000155 [2] 1115578-1115664
AG06213 IMGT000156 [1] 1221430-1221516
IGHD2IGHD2-19 IGHD2-19*01 ORF (2) 14 Susie BK075454✤ [3] MAP 1120612-1120698 AG06213 BK075455✤ [3] 1175581-1175667
AG06213 BK075456✤ [3] 1281434-1281520
AG06213 IMGT000155 [2] 1124944-1125030
AG06213 IMGT000156 [1] 1230796-1230882
IGHD2IGHD2-25 IGHD2-25*01 ORF (2) 14 Susie BK075454✤ [3] MAP 1130028-1130114 AG06213 BK075455✤ [3] 1184997-1185083
AG06213 BK075456✤ [3] 1290849-1290935
AG06213 IMGT000155 [2] 1134360-1134446
AG06213 IMGT000156 [1] 1240211-1240297
IGHD3IGHD3-2 IGHD3-2*01 F 14 Susie BK075454✤ [3] MAP 1095252-1095338 AG06213 BK075455✤ [3] 1150219-1150305
AG06213 BK075456✤ [3] 1256066-1256152
AG06213 IMGT000155 [2] 1099582-1099668
AG06213 IMGT000156 [1] 1205428-1205514
IGHD3IGHD3-8 IGHD3-8*01 F 14 Susie BK075454✤ [3] MAP 1104100-1104186 AG06213 BK075455✤ [3] 1159084-1159170
AG06213 BK075456✤ [3] 1264936-1265022
AG06213 IMGT000155 [2] 1108447-1108533
AG06213 IMGT000156 [1] 1214298-1214384
IGHD3IGHD3-14 IGHD3-14*01 F 14 Susie BK075454✤ [3] MAP 1113839-1113925 AG06213 BK075456✤ [3] 1274660-1274746
AG06213 IMGT000156 [1] 1224022-1224108
IGHD3IGHD3-14 IGHD3-14*02 F 14 AG06213 BK075455✤ [3] 1168807-1168893
IGHD3IGHD3-14 IGHD3-14*02 F 14 AG06213 IMGT000155 [2] 1118170-1118256
IGHD3IGHD3-20 IGHD3-20*01 F 14 Susie BK075454✤ [3] MAP 1122890-1122979 AG06213 BK075455✤ [3] 1177859-1177948
AG06213 BK075456✤ [3] 1283711-1283800
AG06213 IMGT000155 [2] 1127222-1127311
AG06213 IMGT000156 [1] 1233073-1233162
IGHD3IGHD3-26 IGHD3-26*01 F 14 Susie BK075454✤ [3] MAP 1132304-1132396 AG06213 BK075455✤ [3] 1187270-1187362
AG06213 BK075456✤ [3] 1293125-1293217
AG06213 IMGT000155 [2] 1136633-1136725
AG06213 IMGT000156 [1] 1242487-1242579
IGHD4IGHD4-3 IGHD4-3*01 ORF (3) 14 Susie BK075454✤ [3] MAP 1096151-1096222 AG06213 BK075455✤ [3] 1151118-1151188
AG06213 BK075456✤ [3] 1256965-1257036
AG06213 IMGT000155 [2] 1100481-1100551
AG06213 IMGT000156 [1] 1206327-1206398
IGHD4IGHD4-9 IGHD4-9*01 ORF (4) 14 Susie BK075454✤ [3] MAP 1105250-1105321 AG06213 BK075455✤ [3] 1160234-1160305
AG06213 BK075456✤ [3] 1266086-1266157
AG06213 IMGT000155 [2] 1109597-1109668
AG06213 IMGT000156 [1] 1215448-1215519
IGHD4IGHD4-15 IGHD4-15*01 F 14 Susie BK075454✤ [3] MAP 1114988-1115062 AG06213 BK075455✤ [3] 1169959-1170033
AG06213 BK075456✤ [3] 1275812-1275886
AG06213 IMGT000155 [2] 1119322-1119396
AG06213 IMGT000156 [1] 1225174-1225248
IGHD4IGHD4-21 IGHD4-21*01 ORF (5) 14 Susie BK075454✤ [3] MAP 1124033-1124104 AG06213 BK075455✤ [3] 1179002-1179073
AG06213 BK075456✤ [3] 1284854-1284925
AG06213 IMGT000155 [2] 1128365-1128436
AG06213 IMGT000156 [1] 1234216-1234287
IGHD4IGHD4-27 IGHD4-27*01 ORF (6) 14 Susie BK075454✤ [3] MAP 1133463-1133537 AG06213 BK075455✤ [3] 1188429-1188503
AG06213 BK075456✤ [3] 1294284-1294358
AG06213 IMGT000155 [2] 1137792-1137866
AG06213 IMGT000156 [1] 1243646-1243720
IGHD5IGHD5-4 IGHD5-4*01 F 15 Susie BK075454✤ [3] MAP 1097109-1097187 AG06213 BK075455✤ [3] 1152076-1152154
AG06213 BK075456✤ [3] 1257923-1258001
AG06213 IMGT000155 [2] 1101439-1101517
AG06213 IMGT000156 [1] 1207285-1207363
IGHD5IGHD5-10 IGHD5-10*01 ORF (7) 14 Susie BK075454✤ [3] MAP 1106212-1106287
IGHD5IGHD5-10 IGHD5-10*02 ORF (8) 14 AG06213 BK075455✤ [3] 1161196-1161271
IGHD5IGHD5-10 IGHD5-10*02 ORF (8) 14 AG06213 IMGT000155 [2] 1110559-1110634 AG06213 BK075456✤ [3] 1267048-1267123
AG06213 IMGT000156 [1] 1216410-1216485
IGHD5IGHD5-16 IGHD5-16*01 ORF (9) 14 Susie BK075454✤ [3] MAP 1115946-1116021 AG06213 BK075455✤ [3] 1170917-1170992
AG06213 BK075456✤ [3] 1276770-1276845
AG06213 IMGT000155 [2] 1120280-1120355
AG06213 IMGT000156 [1] 1226132-1226207
IGHD5IGHD5-22 IGHD5-22*01 ORF (10) 14 Susie BK075454✤ [3] MAP 1124995-1125073 AG06213 BK075455✤ [3] 1179964-1180042
AG06213 BK075456✤ [3] 1285816-1285894
AG06213 IMGT000155 [2] 1129327-1129405
AG06213 IMGT000156 [1] 1235178-1235256
IGHD5IGHD5-28 IGHD5-28*01 ORF (9) 14 Susie BK075454✤ [3] MAP 1134428-1134503 AG06213 BK075455✤ [3] 1189394-1189469
AG06213 BK075456✤ [3] 1295249-1295324
AG06213 IMGT000155 [2] 1138757-1138832
AG06213 IMGT000156 [1] 1244611-1244686
IGHD6IGHD6-5 IGHD6-5*01 ORF (11) 14 Susie BK075454✤ [3] MAP 1098979-1099055 AG06213 BK075455✤ [3] 1153947-1154023
AG06213 BK075456✤ [3] 1259794-1259870
AG06213 IMGT000155 [2] 1103310-1103386
AG06213 IMGT000156 [1] 1209156-1209232
IGHD6IGHD6-11 IGHD6-11*01 F 14 Susie BK075454✤ [3] MAP 1108073-1108146 AG06213 BK075455✤ [3] 1163058-1163131
AG06213 BK075456✤ [3] 1268910-1268983
AG06213 IMGT000155 [2] 1112421-1112494
AG06213 IMGT000156 [1] 1218272-1218345
IGHD6IGHD6-17 IGHD6-17*01 F 14 Susie BK075454✤ [3] MAP 1117459-1117538 AG06213 BK075455✤ [3] 1172428-1172507
AG06213 BK075456✤ [3] 1278281-1278360
AG06213 IMGT000155 [2] 1121791-1121870
AG06213 IMGT000156 [1] 1227643-1227722
IGHD6IGHD6-23 IGHD6-23*01 F 14 Susie BK075454✤ [3] MAP 1126864-1126940 AG06213 BK075455✤ [3] 1181833-1181909
AG06213 BK075456✤ [3] 1287685-1287761
AG06213 IMGT000155 [2] 1131196-1131272
AG06213 IMGT000156 [1] 1237047-1237123
IGHD6IGHD6-29 IGHD6-29*01 F 14 Susie BK075454✤ [3] MAP 1136802-1136875 AG06213 BK075455✤ [3] 1191769-1191842
AG06213 BK075456✤ [3] 1297624-1297697
AG06213 IMGT000155 [2] 1141132-1141205
AG06213 IMGT000156 [1] 1246986-1247059
IGHD7IGHD7-31 IGHD7-31*01 F 14 Susie BK075454✤ [3] MAP 1159124-1159190 AG06213 BK075455✤ [3] 1214094-1214160
AG06213 BK075456✤ [3] 1319929-1319995
AG06213 IMGT000155 [2] 1163457-1163523
AG06213 IMGT000156 [1] 1269291-1269357

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. noncanonical 5'D-NONAMER:ggataccaa instead of ggtttctga
  2. noncanonical 3'D-NONAMER:tcccaaagc instead of tccaaaact
  3. noncanonical 3'D-NONAMER:gaaaaactg instead of acaaaaacc
  4. noncanonical 5'D-HEPTAMER:tgctgtg instead of cactgtg
  5. noncanonical 3'D-NONAMER:ggaaaaact instead of tccaaaact
  6. noncanonical 5'D-HEPTAMER:tactgtt instead of cactgtg
  7. noncanonical 3'D-NONAMER:gcaccaacc instead of tccaaaact
  8. noncanonical 3'D-NONAMER:gcagcaacc instead of tccaaaact
  9. noncanonical 5'D-HEPTAMER:ggccgtg instead of cactgtg, noncanonical 3'D-NONAMER:gcagcaacc instead of tccaaaact
  10. noncanonical 3'D-NONAMER:gcggcaacc instead of tccaaaact
  11. noncanonical 3'D-NONAMER:caccccaca instead of acaaaaacc
IMGT references: ↑
  1. Koren S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.
  2. Makova K.D. et al., The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes, Unpublished.
  3. Manso T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. 1262-1272. PUBMED: 34875068