Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of dog (Canis lupus familiaris) IGKJ IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
IGKJ1 IGKJ1*01 F 17
RTPr
++
 CM016447.1 Basenji IMGT000067 MAP 302850-302926 Basenji IMGT000180 [1] 270940-271016
Bernese Mountain Dog BK066061✤ [7] 344368-344444
Bernese Mountain Dog BK066062✤ [7] 354825-354901
CM000017.3 Boxer IMGT000002 134472-134548
boxer IMGT000185 [4,6] 220631-220707
Cairn Terrier IMGT000179 [8] 283503-283579
German Shepherd IMGT000184 [3] 250344-250420
Great Dane IMGT000183 [5] 291472-291548
Labrador Retriever IMGT000181 [2] 260086-260162
Labrador Retriever IMGT000182 [9] 265115-265191
IGKJ2 IGKJ2*01 ORF (1) 17
RTPr
++
 CM016447.1 Basenji IMGT000067 MAP 303202-303279 Basenji IMGT000180 [1] 271292-271369
Bernese Mountain Dog BK066061✤ [7] 344720-344797
Bernese Mountain Dog BK066062✤ [7] 355177-355254
CM000017.3 Boxer IMGT000002 134824-134901
boxer IMGT000185 [4,6] 220983-221060
Cairn Terrier IMGT000179 [8] 283855-283932
German Shepherd IMGT000184 [3] 250696-250773
Great Dane IMGT000183 [5] 291824-291901
Labrador Retriever IMGT000181 [2] 260438-260515
Labrador Retriever IMGT000182 [9] 265467-265544
IGKJ3 IGKJ3*01 F 17
RTPr
++
 CM016447.1 Basenji IMGT000067 MAP 303512-303587 Basenji IMGT000180 [1] 271602-271677
Bernese Mountain Dog BK066061✤ [7] 345030-345105
Bernese Mountain Dog BK066062✤ [7] 355487-355562
CM000017.3 Boxer IMGT000002 135134-135209
boxer IMGT000185 [4,6] 221293-221368
Cairn Terrier IMGT000179 [8] 284165-284240
German Shepherd IMGT000184 [3] 251006-251081
Great Dane IMGT000183 [5] 292134-292209
Labrador Retriever IMGT000181 [2] 260749-260824
Labrador Retriever IMGT000182 [9] 265778-265853
IGKJ4 IGKJ4*01 F 17
RTPr
++
 CM016447.1 Basenji IMGT000067 MAP 303843-303919 Basenji IMGT000180 [1] 271934-272009
Bernese Mountain Dog BK066061✤ [7] 345361-345437
Bernese Mountain Dog BK066062✤ [7] 355818-355894
CM000017.3 Boxer IMGT000002 135465-135541
boxer IMGT000185 [4,6] 221624-221700
Cairn Terrier IMGT000179 [8] 284496-284572
German Shepherd IMGT000184 [3] 251337-251413
Great Dane IMGT000183 [5] 292465-292541
Labrador Retriever IMGT000181 [2] 261080-261156
Labrador Retriever IMGT000182 [9] 266109-266185
IGKJ5 IGKJ5*01 F 17
RTPr
++
 CM016447.1 Basenji IMGT000067 MAP 304159-304235 Basenji IMGT000180 [1] 272249-272325
Bernese Mountain Dog BK066061✤ [7] 345677-345753
Bernese Mountain Dog BK066062✤ [7] 356134-356210
CM000017.3 Boxer IMGT000002 135781-135857
boxer IMGT000185 [4,6] 221940-222016
Cairn Terrier IMGT000179 [8] 284812-284888
German Shepherd IMGT000184 [3] 251653-251729
Great Dane IMGT000183 [5] 292781-292857
Labrador Retriever IMGT000181 [2] 261396-261472
Labrador Retriever IMGT000182 [9] 266425-266501

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. noncanonical J-MOTIF: FSXG instead of FGXG
IMGT references: ↑
  1. Edwards R.J. et al., Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome, bioRxiv (2020).
  2. Eory L. et al., Long-read based genome assembly of a Labrador retriever dog, Unpublished.
  3. Field M.A. et al., Draft de novo genome assembly of German Shepherd Dog (Canis lupus familiaris), Unpublished.
  4. Jagannathan V. et al., Update the genome of boxer (canfam3) by PacBio, Unpublished.
  5. Kidd J.M. et al., De novo assembly of a Great Dane genome, Unpublished.
  6. Lindblad-Toh K. et al., Genome sequence, comparative analysis and haplotype structure of the domestic dog, Nature, vol. 438, no. 7069, 2005, pp. 803-819. PUBMED: 16341006
  7. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
  8. Schall P.Z. et al., Canine nanopore genome assemblies and genome wide methylation patterns, Unpublished.
  9. Schall P.Z. et al., Genome-wide methylation patterns from canine nanopore assemblies, G3 (Bethesda) (2023).