Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of goat (Capra hircus) IGKV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGKV1IGKV1-1 IGKV1-1*01 ORF (1) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 404279-404778
IGKV1IGKV1-4 IGKV1-4*01 F 11 CM004572.1 San Clemente IMGT000009 MAP [1] 380077-380577
IGKV1IGKV1-6 IGKV1-6*01 P (2) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 364543-365031
IGKV1IGKV1-7 IGKV1-7*01 P (3) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 353883-354784
IGKV1IGKV1-17 IGKV1-17*01 P (4) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 290803-291302
IGKV1IGKV1-21 IGKV1-21*01 P (5) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 271460-271960
IGKV2IGKV2-8 IGKV2-8*01 F 11 CM004572.1 San Clemente IMGT000009 MAP [1] 350175-350909
IGKV2IGKV2-9 IGKV2-9*01 F 11 CM004572.1 San Clemente IMGT000009 MAP [1] 340900-341679
IGKV2IGKV2-11 IGKV2-11*01 ORF (6) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 334973-335776
IGKV2IGKV2-14 IGKV2-14*01 F 11 CM004572.1 San Clemente IMGT000009 MAP [1] 308648-309452
IGKV2IGKV2-15 IGKV2-15*01 F 11 CM004572.1 San Clemente IMGT000009 MAP [1] 297133-297911
IGKV2IGKV2-18 IGKV2-18*01 P (7) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 283725-284500
IGKV3IGKV3-20 IGKV3-20*01 P (8) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 275716-276504
IGKV6IGKV6-5 IGKV6-5*01 P (9) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 371602-371885 *
IGKV8IGKV8-3 IGKV8-3*01 ORF (10) 11 CM004572.1 San Clemente IMGT000009 MAP [1] 395561-396136
IMGT notes: ↑
  1. noncanonical DONOR-SPLICE: nga instead of ngt, noncanonical ACCEPTOR-SPLICE: nggnn instead of nagnn
  2. STOP-CODON in FR1-IMGT at position AA 6, in FR3-IMGT at position AA 80
  3. STOP-CODON in CDR1-IMGT at position AA 27, in FR2-IMGT at position AA 48 and no DONOR-SPLICE
  4. STOP-CODON at position AA 103 in FR3-IMGT
  5. frameshift in L-PART1
  6. 2nd-CYS is replaced by Ser
  7. frameshift in FR1-IMGT, no DONOR-SPLICE
  8. frameshift in FR3-IMGT
  9. STOP-CODON at position AA 42 in FR2-IMGT, frameshift in FR3-IMGT, no V-NONAMER
  10. noncanonical V-HEPTAMER: cactgtt instead of cacagtg and noncanonical V-NONAMER: ataaacagt instead of acacaaacc
IMGT references: ↑
  1. Schwartz, John C et al. “The antibody loci of the domestic goat (Capra hircus)." Immunogenetics vol. 70,5 (2018): 317-326. DOI: 10.1007/s00251-017-1033-3