Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of bornean orangutan (Pongo pygmaeus) IGLV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation		Chromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		IsolateClone namesAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGLV1IGLV1-56 IGLV1-56*01 F AG05252 IMGT000145 [1] MAP 843781-844287
IGLV1IGLV1-56-4 IGLV1-56-4*01 F AG05252 IMGT000145 [1] MAP 798958-799459
IGLV1IGLV1-56-5 IGLV1-56-5*01 F AG05252 IMGT000145 [1] MAP 793439-793937
IGLV1IGLV1-56-10 IGLV1-56-10*01 F AG05252 IMGT000145 [1] MAP 763128-763634
IGLV1IGLV1-60 IGLV1-60*01 F AG05252 IMGT000145 [1] MAP 295372-295878
IGLV1IGLV1-61 IGLV1-61*01 F AG05252 IMGT000145 [1] MAP 289779-290279
IGLV1IGLV1-70 IGLV1-70*01 P (1) AG05252 IMGT000145 [1] MAP 244487-244989
IGLV1IGLV1-71 IGLV1-71*01 P (2) AG05252 IMGT000145 [1] MAP 231898-232398
IGLV1IGLV1-82 IGLV1-82*01 F AG05252 IMGT000145 [1] MAP 178820-179337
IGLV1IGLV1-100 IGLV1-100*01 P (3) AG05252 IMGT000145 [1] MAP 89924-90421
IGLV1IGLV1-101 IGLV1-101*01 P (4) AG05252 IMGT000145 [1] MAP 82307-82607 *
IGLV2IGLV2-7 IGLV2-7*01 P (5) AG05252 IMGT000145 [1] MAP 1270870-1271375
IGLV2IGLV2-11 IGLV2-11*01 F AG05252 IMGT000145 [1] MAP 1233867-1234374
IGLV2IGLV2-15 IGLV2-15*01 F AG05252 IMGT000145 [1] MAP 1203224-1203716
IGLV2IGLV2-20 IGLV2-20*01 F AG05252 IMGT000145 [1] MAP 1172810-1173319
IGLV2IGLV2-24 IGLV2-24*01 F AG05252 IMGT000145 [1] MAP 1139427-1139936
IGLV2IGLV2-30 IGLV2-30*01 F AG05252 IMGT000145 [1] MAP 1115253-1115752
IGLV2IGLV2-32 IGLV2-32*01 F AG05252 IMGT000145 [1] MAP 1102819-1103318
IGLV2IGLV2-43 IGLV2-43*01 P (2) AG05252 IMGT000145 [1] MAP 1039510-1039794 *
IGLV2IGLV2-48 IGLV2-48*01 P (6) AG05252 IMGT000145 [1] MAP 998457-998971
IGLV2IGLV2-49 IGLV2-49*01 P (7) AG05252 IMGT000145 [1] MAP 990181-990689
IGLV2IGLV2-50 IGLV2-50*01 P (8) AG05252 IMGT000145 [1] MAP <975415->975707 *
IGLV3IGLV3-1 IGLV3-1*01 F AG05252 IMGT000145 [1] MAP 1320777-1321448
IGLV3IGLV3-2 IGLV3-2*01 P (9) AG05252 IMGT000145 [1] MAP 1316679-1317317
IGLV3IGLV3-3 IGLV3-3*01 P (10) AG05252 IMGT000145 [1] MAP 1312655-1313161
IGLV3IGLV3-4 IGLV3-4*01 P (11) AG05252 IMGT000145 [1] MAP 1308398-1308909
IGLV3IGLV3-6 IGLV3-6*01 P (12) AG05252 IMGT000145 [1] MAP 1277208-1277723
IGLV3IGLV3-8 IGLV3-8*01 P (13) AG05252 IMGT000145 [1] MAP 1264071-1264596
IGLV3IGLV3-9 IGLV3-9*01 P (4) AG05252 IMGT000145 [1] MAP 1252529-1252816 *
IGLV3IGLV3-12 IGLV3-12*01 P (14) AG05252 IMGT000145 [1] MAP 1229324-1230052
IGLV3IGLV3-13 IGLV3-13*01 P (15) AG05252 IMGT000145 [1] MAP 1220512-1221048
IGLV3IGLV3-14 IGLV3-14*01 P (16) AG05252 IMGT000145 [1] MAP 1208507-1208792 *
IGLV3IGLV3-16 IGLV3-16*01 F AG05252 IMGT000145 [1] MAP 1199545-1200209
IGLV3IGLV3-18 IGLV3-18*01 F AG05252 IMGT000145 [1] MAP 1192164-1192702
IGLV3IGLV3-22 IGLV3-22*01 P (17) AG05252 IMGT000145 [1] MAP 1152167-1152802
IGLV3IGLV3-23 IGLV3-23*01 P (18) AG05252 IMGT000145 [1] MAP 1142586-1143119
IGLV3IGLV3-25 IGLV3-25*01 P (19) AG05252 IMGT000145 [1] MAP 1135709-1136403
IGLV3IGLV3-27 IGLV3-27*01 F AG05252 IMGT000145 [1] MAP 1127919-1128458
IGLV3IGLV3-29 IGLV3-29*01 P (20) AG05252 IMGT000145 [1] MAP 1119545-1119833 *
IGLV3IGLV3-31 IGLV3-31*01 P (21) AG05252 IMGT000145 [1] MAP 1105973-1106507
IGLV3IGLV3-33 IGLV3-33*01 F AG05252 IMGT000145 [1] MAP 1086562-1087093
IGLV3IGLV3-35 IGLV3-35*01 F AG05252 IMGT000145 [1] MAP 1078305-1079115
IGLV3IGLV3-37 IGLV3-37*01 F AG05252 IMGT000145 [1] MAP 1070219-1070750
IGLV3IGLV3-39 IGLV3-39*01 F AG05252 IMGT000145 [1] MAP 1062110-1062661
IGLV3IGLV3-41 IGLV3-41*01 P (22) AG05252 IMGT000145 [1] MAP 1048033-1048566
IGLV3IGLV3-42 IGLV3-42*01 F AG05252 IMGT000145 [1] MAP 1043198-1043719
IGLV3IGLV3-44 IGLV3-44*01 P (23) AG05252 IMGT000145 [1] MAP 1035740-1036252
IGLV3IGLV3-45 IGLV3-45*01 P (24) AG05252 IMGT000145 [1] MAP 1029493-1030030
IGLV3IGLV3-46 IGLV3-46*01 P (25) AG05252 IMGT000145 [1] MAP 1015005-1015525
IGLV3IGLV3-47 IGLV3-47*01 P (26) AG05252 IMGT000145 [1] MAP 1004797-1005318
IGLV4IGLV4-10 IGLV4-10*01 P (27) AG05252 IMGT000145 [1] MAP 1248621-1249160
IGLV4IGLV4-19 IGLV4-19*01 P (28) AG05252 IMGT000145 [1] MAP 1183174-1183709
IGLV4IGLV4-67 IGLV4-67*01 F AG05252 IMGT000145 [1] MAP 257071-257589
IGLV4IGLV4-74 IGLV4-74*01 P (29) AG05252 IMGT000145 [1] MAP 213426->213726 *
IGLV4IGLV4-81 IGLV4-81*01 F AG05252 IMGT000145 [1] MAP 183669-184185
IGLV4IGLV4-91 IGLV4-91*01 P (30) AG05252 IMGT000145 [1] MAP 131416-131712 *
IGLV4IGLV4-95 IGLV4-95*01 F AG05252 IMGT000145 [1] MAP 111786-112307
IGLV5IGLV5-53 IGLV5-53*01 P (31) AG05252 IMGT000145 [1] MAP 879285-879808
IGLV5IGLV5-56-1 IGLV5-56-1*01 F AG05252 IMGT000145 [1] MAP 838939-839470
IGLV5IGLV5-56-7 IGLV5-56-7*01 P (32) AG05252 IMGT000145 [1] MAP 785968-786496
IGLV5IGLV5-57 IGLV5-57*01 F AG05252 IMGT000145 [1] MAP 316886-317414
IGLV5IGLV5-62 IGLV5-62*01 P (33) AG05252 IMGT000145 [1] MAP 286023-286551
IGLV5IGLV5-72 IGLV5-72*01 P (2) AG05252 IMGT000145 [1] MAP 227323-227846
IGLV5IGLV5-73 IGLV5-73*01 P (34) AG05252 IMGT000145 [1] MAP 222373-222894
IGLV5IGLV5-75 IGLV5-75*01 P (35) AG05252 IMGT000145 [1] MAP 210500-211021
IGLV5IGLV5-92 IGLV5-92*01 P (36) AG05252 IMGT000145 [1] MAP <128071->128380 *
IGLV5IGLV5-98 IGLV5-98*01 P (37) AG05252 IMGT000145 [1] MAP 102840-103371
IGLV5IGLV5-99 IGLV5-99*01 P (38) AG05252 IMGT000145 [1] MAP 94864-95396
IGLV6IGLV6-64 IGLV6-64*01 P (13) AG05252 IMGT000145 [1] MAP 274534-275019
IGLV6IGLV6-84 IGLV6-84*01 F AG05252 IMGT000145 [1] MAP 173345-173863
IGLV6IGLV6-90 IGLV6-90*01 F AG05252 IMGT000145 [1] MAP 144628-145144
IGLV7IGLV7-51 IGLV7-51*01 P (39) AG05252 IMGT000145 [1] MAP 886361->886651 *
IGLV7IGLV7-55 IGLV7-55*01 P (40) AG05252 IMGT000145 [1] MAP 857928-858417
IGLV7IGLV7-56-9 IGLV7-56-9*01 F AG05252 IMGT000145 [1] MAP 778461-778940
IGLV7IGLV7-59 IGLV7-59*01 F AG05252 IMGT000145 [1] MAP 305087-305568
IGLV7IGLV7-68 IGLV7-68*01 P (41) AG05252 IMGT000145 [1] MAP 253685-254159
IGLV7IGLV7-93 IGLV7-93*01 P (42) AG05252 IMGT000145 [1] MAP 117784-118258
IGLV7IGLV7-96 IGLV7-96*01 P (43) AG05252 IMGT000145 [1] MAP 108484-108940
IGLV8IGLV8-103 IGLV8-103*01 P (5) AG05252 IMGT000145 [1] MAP 25672-26159
IGLV9IGLV9-56-3 IGLV9-56-3*01 P (44) AG05252 IMGT000145 [1] MAP 829242-829788
IGLV9IGLV9-63 IGLV9-63*01 P (45) AG05252 IMGT000145 [1] MAP <280545-280859 *
IGLV10IGLV10-77 IGLV10-77*01 P (46) AG05252 IMGT000145 [1] MAP 196335-196629 *
IGLV10IGLV10-83 IGLV10-83*01 P (47) AG05252 IMGT000145 [1] MAP 176871->177145 *
IGLV10IGLV10-86 IGLV10-86*01 F AG05252 IMGT000145 [1] MAP 163586-164090
IGLV11IGLV11-87 IGLV11-87*01 F AG05252 IMGT000145 [1] MAP 150506-151031
IMGT notes: ↑
  1. STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 111
  2. frameshifts in V-REGION: several insertions and deletions
  3. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
  4. no L-PART1, frameshifts in V-REGION: several insertions and deletions
  5. frameshift in V-REGION: deletion of 4 nt in FR1-IMGT
  6. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  7. STOP-CODON in V-REGION: position 44
  8. no L-PART1, no L-PART2, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT, no V-RS
  9. STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 43, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  10. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  11. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  12. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshift in L-PART2, STOP-CODON in V-REGION: position 43, frameshifts in V-REGION: several insertions and deletions
  13. no L-PART2, frameshifts in V-REGION: several insertions and deletions
  14. no L-PART2
  15. several STOP-CODON in V-REGION, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  16. frameshift in V-REGION: deletion of 4 nt in FR3-IMGT, no V-NONAMER
  17. STOP-CODON in L-PART1, no DONOR-SPLICE
  18. no INIT-CODON:Thr instead of Met, STOP-CODON in V-REGION: position 109
  19. frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions
  20. no DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT, no V-NONAMER
  21. STOP-CODON in V-REGION: position 109
  22. no INIT-CODON:Val instead of Met, STOP-CODON in L-PART1, no DONOR-SPLICE, frameshifts in V-REGION: insertion of 11 nt and deletion of 1 nt in FR3-IMGT
  23. frameshift in L-PART1 causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 40, frameshifts in V-REGION: deletion of 2 nt and deletion of 5 nt in FR3-IMGT
  24. no DONOR-SPLICE, frameshift in V-REGION: insertion of 5 nt in FR3-IMGT
  25. several STOP-CODON in V-REGION
  26. frameshift in V-REGION: deletion of 7 nt in FR3-IMGT
  27. no INIT-CODON:Ala instead of Met, several STOP-CODON in V-REGION
  28. no INIT-CODON:Thr instead of Met, STOP-CODON in V-REGION: position 16
  29. no INIT-CODON:Ile instead of Met, frameshift in V-REGION: deletion of 2 nt in FR1-IMGT, no V-RS
  30. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions, no V-RS
  31. no INIT-CODON:Thr instead of Met, no ACCEPTOR-SPLICE, frameshift in V-REGION: insertion of 1 nt in CDR1-IMGT
  32. STOP-CODON in V-REGION: position 6
  33. frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  34. STOP-CODON in V-REGION: position 18, frameshifts in V-REGION: several insertions and deletions
  35. frameshift in V-REGION: insertion of 2 nt in FR3-IMGT
  36. no L-PART2, frameshifts in V-REGION: several insertions and deletions, no V-RS
  37. STOP-CODON in V-REGION: position 58
  38. several STOP-CODON in V-REGION, frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  39. frameshifts in V-REGION: several insertions and deletions, no INIT-CODON:Thr instead of Met, no V-RS
  40. frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  41. no ACCEPTOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  42. several STOP-CODON in V-REGION, no 2nd-CYS: STOP-CODON instead of Cys
  43. no L-PART2, frameshifts in V-REGION: several insertions and deletions, no INIT-CODON:Ile instead of Met
  44. frameshift in V-REGION: deletion of 2nt in FR3-IMGT
  45. no L-PART1, no L-PART2, frameshifts in V-REGION: several insertions and deletions
  46. frameshift in V-REGION: deletion of 1nt in FR3-IMGT, no V-NONAMER
  47. no L-PART1, STOP-CODON in V-REGION: position 18, frameshifts in V-REGION: several insertions and deletions, no V-RS
IMGT references: ↑
  1. Koren,S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.