Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
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Gene table of bovine (Bos taurus) TRAJ IMGT group:
IMGT allele name
Score for
IMGT allele
confirmation
Fct
Chromosomosal
localization
R T Pr
IMGT/LIGM-DB sequences from the literature
Clone names
Breed
Accession
numbers
Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
Secondary
accession
numbers
Clone names
Breed
Accession
numbers
Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
TRAJ1TRAJ1*01F10
R αT αPr αR δT δPr δ
+
CM008177.2HerefordBK064707 [4,5] MAP3312783-3312872AY227782 [1]50355-50444
HerefordBtau3.1_Chr10.30 [3] (7)complement(320653-320742)
TRAJ2TRAJ2*01F10
R αT αPr αR δT δPr δ
++
CM008177.2HerefordBK064707 [4,5] MAP3311812-3311905AY227782 [1]49384-49477
HerefordBtau3.1_Chr10.30 [3] (7)complement(321620-321713)
TRAJ3TRAJ3*01F10
R αT αPr αR δT δPr δ
++
CM008177.2HerefordBK064707 [4,5] MAP3311273-3311359AY227782 [1]48845-48931
HerefordBtau3.1_Chr10.30 [3] (7)complement(322166-322252)
TRAJ4TRAJ4*01F10CM008177.2HerefordBK064707 [4,5] MAP3310299-3310389HerefordBtau3.1_Chr10.30 [3] (7)complement(323136-323226)
TRAJ4TRAJ4*02(1)10
R αT αPr αR δT δPr δ
+
AY227782 [1] (8)47872-47961
TRAJ5TRAJ5*01F10
R αT αPr αR δT δPr δ
++
CM008177.2HerefordBK064707 [4,5] MAP3307113-3307200AY227782 [1]44685-44772
HerefordBtau3.1_Chr10.30 [3] (7)complement(326325-326412)
TRAJ6TRAJ6*01F10
R αT αPr αR δT δPr δ
+
CM008177.2HerefordBK064707 [4,5] MAP3305923-3306012AY227782 [1]43495-43584
HerefordBtau3.1_Chr10.30 [3] (7)complement(327513-327602)
TRAJ7TRAJ7*01F10
R αT αPr αR δT δPr δ
++
CM008177.2HerefordBK064707 [4,5] MAP3305348-3305431AY227782 [1]42920-43003
TRAJ6*01HerefordBtau3.1_Chr10.30 [3] (7)complement(328094-328177)
TRAJ8-1TRAJ8-1*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ8*01HerefordBK064707 [4,5] MAP3303799-3303886TRAJ8*01AY227782 [1]41371-41458
TRAJ7*01, TRAJ8*01HerefordBtau3.1_Chr10.30 [3] (7)complement(329639-329726)
TRAJ8-2TRAJ8-2*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ10*01HerefordBK064707 [4,5] MAP3301011-3301098TRAJ8*01, TRAJ10*01HerefordBtau3.1_Chr10.30 [3] (7)complement(332427-332514)
TRAJ8-2TRAJ8-2*02F10
R αT αPr αR δT δPr δ
+
TRAJ10*02AY227782 [1] (8)38583-38670
TRAJ9TRAJ9*01F10
R αT αPr αR δT δPr δ
+
CM008177.2HerefordBK064707 [4,5] MAP3303209-3303297AY227782 [1]40781-40869
HerefordBtau3.1_Chr10.30 [3] (7)complement(330228-330316)
TRAJ10TRAJ10*01F10
R αT αPr αR δT δPr δ
+
CM008177.2, TRAJ11*01HerefordBK064707 [4,5] MAP3300550-3300639TRAJ11*01AY227782 [1]38122-38211
TRAJ9*01, TRAJ11*01HerefordBtau3.1_Chr10.30 [3] (7)complement(332886-332975)
TRAJ11TRAJ11*01F10CM008177.2, TRAJ12*01HerefordBK064707 [4,5] MAP3299541-3299628TRAJ10*01, TRAJ12*01HerefordBtau3.1_Chr10.30 [3] (7)complement(333897-333984)
TRAJ11TRAJ11*02F10
R αT αPr αR δT δPr δ
+
TRAJ12*02AY227782 [1] (8)37113-37200
TRAJ12TRAJ12*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ13*01HerefordBK064707 [4,5] MAP3298980-3299067TRAJ13*01AY227782 [1]36552-36639
TRAJ11*01, TRAJ13*01HerefordBtau3.1_Chr10.30 [3] (7)complement(334458-334545)
TRAJ13TRAJ13*01(2)10
R αT αPr αR δT δPr δ
+
CM008177.2, TRAJ14*01HerefordBK064707 [4,5] MAP3298152-3298212 *TRAJ14*01AY227782 [1]35721-35781 *
TRAJ13TRAJ13*02(2)10TRAJ14*02HerefordBtau3.1_Chr10.30 [3] (7,8)complement(335316-335376) *
TRAJ14TRAJ14*01(2)10CM008177.2, TRAJ15*01HerefordBK064707 [4,5] MAP3297372-3297428 *TRAJ12*01, TRAJ15*01HerefordBtau3.1_Chr10.30 [3] (7)complement(336100-336156) *
TRAJ14TRAJ14*02(2)10
R αT αPr αR δT δPr δ
+
TRAJ15*02AY227782 [1] (8)35008-35064 *
TRAJ15TRAJ15*01F10
R αT αPr αR δT δPr δ
+
CM008177.2, TRAJ16*01HerefordBK064707 [4,5] MAP3296449-3296536TRAJ16*01AY227782 [1]34085-34172
TRAJ16*01HerefordBtau3.1_Chr10.30 [3] (7)complement(336992-337079)
TRAJ15TRAJ15*02(1)10TRAJ16*02AJ245969 [2] (8)1421-1509
TRAJ16TRAJ16*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ17*01HerefordBK064707 [4,5] MAP3295353-3295441TRAJ17*01AJ245969 [2]325-413
TRAJ17*01AY227782 [1]32989-33077
TRAJ13*01, TRAJ17*01HerefordBtau3.1_Chr10.30 [3] (7)complement(338087-338175)
TRAJ17TRAJ17*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ18*01HerefordBK064707 [4,5] MAP3293734-3293824TRAJ18*01AY227782 [1]31370-31460
TRAJ14*01, TRAJ18*01HerefordBtau3.1_Chr10.30 [3] (7)complement(339704-339794)
TRAJ18TRAJ18*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ19*01HerefordBK064707 [4,5] MAP3292624-3292717TRAJ19*01AY227782 [1]30260-30353
TRAJ15*01, TRAJ19*01HerefordBtau3.1_Chr10.30 [3] (7)complement(340811-340904)
TRAJ19TRAJ19*01(2)10
R αT αPr αR δT δPr δ
+
CM008177.2, TRAJ20*01HerefordBK064707 [4,5] MAP3292268-3292325 *TRAJ20*01AY227782 [1]29904-29961 *
TRAJ20*01HerefordBtau3.1_Chr10.30 [3] (7)complement(341203-341260) *
TRAJ20TRAJ20*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ21*01HerefordBK064707 [4,5] MAP3291271-3291356TRAJ21*01AY227782 [1]28910-28995
TRAJ16*01, TRAJ21*01HerefordBtau3.1_Chr10.30 [3] (7)complement(342172-342257)
TRAJ21TRAJ21*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ22*01HerefordBK064707 [4,5] MAP3290565-3290647TRAJ22*01AY227782 [1]28200-28282
TRAJ17*01, TRAJ22*01HerefordBtau3.1_Chr10.30 [3] (7)complement(342883-342965)
TRAJ22TRAJ22*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ23*01HerefordBK064707 [4,5] MAP3289033-3289123TRAJ23*01AY227782 [1]26668-26758
TRAJ18*01, TRAJ23*01HerefordBtau3.1_Chr10.30 [3] (7)complement(344407-344497)
TRAJ23TRAJ23*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ24*01HerefordBK064707 [4,5] MAP3287914-3288004TRAJ24*01AY227782 [1]25549-25639
TRAJ19*01, TRAJ24*01HerefordBtau3.1_Chr10.30 [3] (7)complement(345526-345616)
TRAJ24TRAJ24*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ25*01HerefordBK064707 [4,5] MAP3287473-3287563TRAJ25*01AY227782 [1]25108-25198
TRAJ20*01, TRAJ25*01HerefordBtau3.1_Chr10.30 [3] (7)complement(345967-346057)
TRAJ25TRAJ25*01F10CM008177.2, TRAJ26*01HerefordBK064707 [4,5] MAP3286621-3286708TRAJ21*01, TRAJ26*01HerefordBtau3.1_Chr10.30 [3] (7)complement(346822-346909)
TRAJ25TRAJ25*02F10
R αT αPr αR δT δPr δ
++
TRAJ26*02AY227782 [1] (8)24257-24344
TRAJ26TRAJ26*01ORF (3)10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ27*01HerefordBK064707 [4,5] MAP3286323-3286410TRAJ27*01AY227782 [1]23959-24046
TRAJ27*01HerefordBtau3.1_Chr10.30 [3] (7)complement(347120-347207)
TRAJ27TRAJ27*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ28*01HerefordBK064707 [4,5] MAP3284156-3284242TRAJ28*01AY227782 [1]21792-21878
TRAJ22*01, TRAJ28*01HerefordBtau3.1_Chr10.30 [3] (7)complement(349288-349374)
TRAJ28TRAJ28*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ39*01HerefordBK064707 [4,5] MAP3283501-3283594TRAJ29*01AY227782 [1]21137-21230
TRAJ23*01, TRAJ29*01HerefordBtau3.1_Chr10.30 [3] (7)complement(349936-350029)
TRAJ29TRAJ29*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ30*01HerefordBK064707 [4,5] MAP3282516-3282603TRAJ30*01AY227782 [1]20152-20239
TRAJ24*01, TRAJ30*01HerefordBtau3.1_Chr10.30 [3] (7)complement(350927-351014)
TRAJ30TRAJ30*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ31*01HerefordBK064707 [4,5] MAP3281454-3281540TRAJ31*01AY227782 [1]19090-19176
TRAJ25*01, TRAJ31*01HerefordBtau3.1_Chr10.30 [3] (7)complement(351990-352076)
TRAJ31TRAJ31*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ32*01HerefordBK064707 [4,5] MAP3279361-3279446TRAJ26*01, TRAJ32*01HerefordBtau3.1_Chr10.30 [3] (7)complement(354084-354169)
TRAJ31TRAJ31*02F10
R αT αPr αR δT δPr δ
+
TRAJ32*02AY227782 [1] (8)16997-17082
TRAJ32TRAJ32*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ33*01HerefordBK064707 [4,5] MAP3277548-3277641TRAJ33*01AY227782 [1]15184-15277
TRAJ27*01, TRAJ33*01HerefordBtau3.1_Chr10.30 [3] (7)complement(355889-355982)
TRAJ33TRAJ33*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ34*01HerefordBK064707 [4,5] MAP3276813-3276897TRAJ34*01AY227782 [1]14449-14533
TRAJ28*01, TRAJ34*01HerefordBtau3.1_Chr10.30 [3] (7)complement(356633-356717)
TRAJ34TRAJ34*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ35*01HerefordBK064707 [4,5] MAP3276123-3276207TRAJ35*01AY227782 [1]13759-13843
TRAJ29*01, TRAJ35*01HerefordBtau3.1_Chr10.30 [3] (7)complement(357323-357407)
TRAJ35TRAJ35*01ORF (4)10
R αT αPr αR δT δPr δ
+
CM008177.2, TRAJ36*01HerefordBK064707 [4,5] MAP3275094-3275177TRAJ36*01AY227782 [1]12730-12813
TRAJ30*01, TRAJ36*01HerefordBtau3.1_Chr10.30 [3] (7)complement(358353-358436)
TRAJ36TRAJ36*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ37*01HerefordBK064707 [4,5] MAP3273624-3273712TRAJ37*01AY227782 [1]11255-11343
TRAJ37*01HerefordBtau3.1_Chr10.30 [3] (7)complement(359818-359906)
TRAJ37TRAJ37*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ38*01HerefordBK064707 [4,5] MAP3272911-3273000TRAJ31*01, TRAJ38*01HerefordBtau3.1_Chr10.30 [3] (7)complement(360530-360619)
TRAJ37TRAJ37*02F10
R αT αPr αR δT δPr δ
+
TRAJ38*02AY227782 [1] (8)10542-10631
TRAJ38TRAJ38*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ39*01HerefordBK064707 [4,5] MAP3271409-3271498TRAJ39*01AY227782 [1]9039-9128
TRAJ32*01, TRAJ39*01HerefordBtau3.1_Chr10.30 [3] (7)complement(362032-362121)
TRAJ39TRAJ39*01F10CM008177.2, TRAJ40*01HerefordBK064707 [4,5] MAP3270769-3270859TRAJ33*01, TRAJ40*01HerefordBtau3.1_Chr10.30 [3] (7)complement(362671-362761)
TRAJ39TRAJ39*02F10
R αT αPr αR δT δPr δ
+
TRAJ40*02AY227782 [1] (8)8399-8489
TRAJ40TRAJ40*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ41*01HerefordBK064707 [4,5] MAP3268663-3268747TRAJ41*01AY227782 [1]6297-6381
TRAJ34*01, TRAJ41*01HerefordBtau3.1_Chr10.30 [3] (7)complement(364783-364867)
TRAJ41TRAJ41*01F10CM008177.2, TRAJ42*01HerefordBK064707 [4,5] MAP3266961-3267049TRAJ35*01, TRAJ42*01HerefordBtau3.1_Chr10.30 [3] (7)complement(366481-366569)
TRAJ41TRAJ41*02F10
R αT αPr αR δT δPr δ
+
TRAJ42*02AY227782 [1] (8)4594-4682
TRAJ42TRAJ42*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ43*01HerefordBK064707 [4,5] MAP3266487-3266580TRAJ43*01AY227782 [1]4162-4219 *
TRAJ36*01, TRAJ43*01HerefordBtau3.1_Chr10.30 [3] (7)complement(366950-367043)
TRAJ43TRAJ43*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ44*01HerefordBK064707 [4,5] MAP3265708-3265792TRAJ37*01, TRAJ44*01HerefordBtau3.1_Chr10.30 [3] (7)complement(367738-367822)
TRAJ44TRAJ44*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ45*01HerefordBK064707 [4,5] MAP3264401-3264490TRAJ38*01, TRAJ45*01HerefordBtau3.1_Chr10.30 [3] (7)complement(369040-369129)
TRAJ45TRAJ45*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ46*01HerefordBK064707 [4,5] MAP3263555-3263645
TRAJ45TRAJ45*02F10TRAJ39*01, TRAJ46*02HerefordBtau3.1_Chr10.30 [3] (7,8)complement(369885-369975)
TRAJ46TRAJ46*01F10CM008177.2, TRAJ47*01HerefordBK064707 [4,5] MAP3263043-3263133TRAJ40*01, TRAJ47*01HerefordBtau3.1_Chr10.30 [3] (7)complement(370397-370487)
TRAJ47TRAJ47*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ48*01HerefordBK064707 [4,5] MAP3262305-3262389TRAJ48*01HerefordBtau3.1_Chr10.30 [3] (7)complement(371141-371225)
TRAJ48TRAJ48*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ49*01HerefordBK064707 [4,5] MAP3260279-3260369TRAJ41*01, TRAJ49*01HerefordBtau3.1_Chr10.30 [3] (7)complement(373161-373251)
TRAJ49TRAJ49*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ50*01HerefordBK064707 [4,5] MAP3259396-3259479TRAJ42*01, TRAJ50*01HerefordBtau3.1_Chr10.30 [3] (7)complement(374051-374134)
TRAJ50TRAJ50*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ51*01HerefordBK064707 [4,5] MAP3258509-3258592TRAJ43*01, TRAJ51*01HerefordBtau3.1_Chr10.30 [3] (7)complement(374938-375021)
TRAJ52TRAJ52*01F10
R αT αPr αR δT δPr δ
++
CM008177.2HerefordBK064707 [4,5] MAP3256151-3256247TRAJ44*01HerefordBtau3.1_Chr10.30 [3] (7)complement(377283-377379)
TRAJ53TRAJ53*01F10
R αT αPr αR δT δPr δ
++
CM008177.2HerefordBK064707 [4,5] MAP3252941-3253034TRAJ45*01HerefordBtau3.1_Chr10.30 [3] (7)complement(380497-380590)
TRAJ54TRAJ54*01(5)10
R αT αPr αR δT δPr δ
++
CM008177.2HerefordBK064707 [4,5] MAP3252289-3252380TRAJ46*01HerefordBtau3.1_Chr10.30 [3] (7)complement(381151-381242)
TRAJ56TRAJ56*01(5)10CM008177.2, TRAJ55*01HerefordBK064707 [4,5] MAP3249539-3249624TRAJ47*01, TRAJ55*01HerefordBtau3.1_Chr10.30 [3] (7)complement(383907-383992)
TRAJ57TRAJ57*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ56*01HerefordBK064707 [4,5] MAP3248905-3248995TRAJ48*01, TRAJ56*01HerefordBtau3.1_Chr10.30 [3] (7)complement(384536-384626)
TRAJ58TRAJ58*01F10
R αT αPr αR δT δPr δ
++
CM008177.2, TRAJ57*01HerefordBK064707 [4,5] MAP3247667-3247757TRAJ49*01, TRAJ57*01HerefordBtau3.1_Chr10.30 [3] (7)complement(385774-385864)
TRAJ59TRAJ59*01F10CM008177.2, TRAJ58*01HerefordBK064707 [4,5] MAP3246512-3246592TRAJ50*01, TRAJ58*01HerefordBtau3.1_Chr10.30 [3] (7)complement(386939-387019)
TRAJ60TRAJ60*01F10CM008177.2, TRAJ59*01HerefordBK064707 [4,5] MAP3246274-3246358TRAJ51*01, TRAJ59*01HerefordBtau3.1_Chr10.30 [3] (7)complement(387173-387257)
TRAJ61TRAJ61*01(6)10CM008177.2, TRAJ60*01HerefordBK064707 [4,5] MAP3245304-3245392TRAJ52*01, TRAJ60*01HerefordBtau3.1_Chr10.30 [3] (7)complement(388139-388227)

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes:
  1. frameshift in J-REGION
  2. no J-NONAMER
  3. noncanonical J-MOTIF: FSXG instead of FGXG
  4. noncanonical J-MOTIF: LGXG instead of FGXG
  5. STOP-CODON at position 1 (first 5' codon of germline J-REGION) may disappear during rearrangements
  6. STOP-CODON in J-REGION
  7. The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore
  8. Sequence not in locus reference sequence (assembly ARS-UCD1.2)
IMGT references:
  1. Conrad M.L. et al., Genomic sequencing of the T cell receptor alpha locus, Unpublished.
  2. Ewald D. et al., Assessment of the nucleotide diversity in the bovine T-cell receptor alpha delta joining region, Unpublished.
  3. Herzig C.T. et al., Annotation and classification of the bovine T cell receptor delta genes, BMC Genomics, vol. 11, 2010, pp. 100-100. DOI: 10.1186/1471-2164-11-100
  4. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
  5. Pegorier P et al., IMGT((R)) Biocuration and Comparative Analysis of Bos taurus and Ovis aries TRA/TRD Loci, Genes (Basel), vol. 12, no. 1, 2020, pp. E30-. PUBMED: 33379283