Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Some genes were declared functional because it has been found rearranged in specific sequences in Bioproject PRJNA939558.
Gene table of domestic ferret (Mustela putorius furo) TRAV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
TRAV3TRAV3 TRAV3*01 P (1) JIRA1106 BK068537✤ [1] 9828-10287
TRAV5TRAV5 TRAV5*01 F (2)
RTPr
++
 JIRA1106 BK068537✤ [1] 28742-29288
TRAV6TRAV6 TRAV6*01 F (3)
RTPr
++
 JIRA1106 BK068537✤ [1] 35533-36544
TRAV8TRAV8-1 TRAV8-1*01 P (4) JIRA1106 BK068537✤ [1] 22223-22506 *
TRAV8TRAV8-2 TRAV8-2*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 501111-501650
TRAV8TRAV8-3 TRAV8-3*01 P (5) JIRA1106 BK068537✤ [1] 558889-559376
TRAV9TRAV9-1 TRAV9-1*01 P (6) JIRA1106 BK068537✤ [1] 44221-44498 *
TRAV9TRAV9-2 TRAV9-2*01 F JIRA1106 BK068537✤ [1] 68172-68668
TRAV9TRAV9-3 TRAV9-3*01 F JIRA1106 BK068537✤ [1] 76925-77423
TRAV9TRAV9-4 TRAV9-4*01 F JIRA1106 BK068537✤ [1] 113023-113520
TRAV9TRAV9-5 TRAV9-5*01 F JIRA1106 BK068537✤ [1] 139877-140375
TRAV9TRAV9-6 TRAV9-6*01 F JIRA1106 BK068537✤ [1] 158426-158923
TRAV9TRAV9-7 TRAV9-7*01 ORF (7) JIRA1106 BK068537✤ [1] 168062-168559
TRAV9TRAV9-8 TRAV9-8*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 193840-194336
TRAV9TRAV9-9 TRAV9-9*01 ORF (8) JIRA1106 BK068537✤ [1] 225463-225961
TRAV9TRAV9-10 TRAV9-10*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 248398-248895
TRAV9TRAV9-11 TRAV9-11*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 288386-288883
TRAV9TRAV9-12 TRAV9-12*01 F JIRA1106 BK068537✤ [1] 316641-317139
TRAV9TRAV9-13 TRAV9-13*01 F (9)
RTPr
++
 JIRA1106 BK068537✤ [1] 331409-331906
TRAV9TRAV9-14 TRAV9-14*01 P (10) JIRA1106 BK068537✤ [1] 348093-348589
TRAV9TRAV9-15 TRAV9-15*01 F JIRA1106 BK068537✤ [1] 384487-384985
TRAV9TRAV9-16 TRAV9-16*01 F (11)
RTPr
++
 JIRA1106 BK068537✤ [1] 416094-416592
TRAV9TRAV9-17 TRAV9-17*01 P (1) JIRA1106 BK068537✤ [1] 443181-443693
TRAV9TRAV9-18 TRAV9-18*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 465485-465985
TRAV9TRAV9-19 TRAV9-19*01 F (12)
RTPr
++
 JIRA1106 BK068537✤ [1] 476368-476869
TRAV10TRAV10 TRAV10*01 P (1) JIRA1106 BK068537✤ [1] 485106-485708
TRAV11TRAV11 TRAV11*01 P (13) JIRA1106 BK068537✤ [1] 490637-491194
TRAV12TRAV12 TRAV12*01 P (14)
RTPr
++
 JIRA1106 BK068537✤ [1] 498713-499292
TRAV13TRAV13-1 TRAV13-1*01 P (15) JIRA1106 BK068537✤ [1] 90553-91097
TRAV13TRAV13-2 TRAV13-2*01 F (16)
RTPr
++
 JIRA1106 BK068537✤ [1] 102488-103032
TRAV13TRAV13-3 TRAV13-3*01 P (17) JIRA1106 BK068537✤ [1] 129805->129972 *
TRAV13TRAV13-4 TRAV13-4*01 P (18) JIRA1106 BK068537✤ [1] 152042-152586
TRAV13TRAV13-5 TRAV13-5*01 P (19) JIRA1106 BK068537✤ [1] 181335-181876
TRAV13TRAV13-6 TRAV13-6*01 P (20) JIRA1106 BK068537✤ [1] 207489->207626 *
TRAV13TRAV13-7 TRAV13-7*01 P (21) JIRA1106 BK068537✤ [1] <214817-215000 *
TRAV13TRAV13-8 TRAV13-8*01 P (22) JIRA1106 BK068537✤ [1] 235909-236452
TRAV13TRAV13-9 TRAV13-9*01 P (1) JIRA1106 BK068537✤ [1] 269496-270046
TRAV13TRAV13-10 TRAV13-10*01 P (23) JIRA1106 BK068537✤ [1] 276459-276999
TRAV13TRAV13-11 TRAV13-11*01 F (24)
RTPr
++
 JIRA1106 BK068537✤ [1] 305816-306338
TRAV13TRAV13-12 TRAV13-12*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 364985-365529
TRAV13TRAV13-13 TRAV13-13*01 F (25)
RTPr
++
 JIRA1106 BK068537✤ [1] 407574-408102
TRAV13TRAV13-14 TRAV13-14*01 P (26) JIRA1106 BK068537✤ [1] 434959-435488
TRAV13TRAV13-15 TRAV13-15*01 P (1) JIRA1106 BK068537✤ [1] 458273-458807
TRAV14TRAV14-1 TRAV14-1*01 ORF (27) JIRA1106 BK068537✤ [1] 71635-72197
TRAV14TRAV14-2 TRAV14-2*01 ORF (28) JIRA1106 BK068537✤ [1] 161134-161706
TRAV14TRAV14-3 TRAV14-3*01 F JIRA1106 BK068537✤ [1] 252077-252642
TRAV14TRAV14-4 TRAV14-4*01 P (1) JIRA1106 BK068537✤ [1] 334875-335431
TRAV14TRAV14-5 TRAV14-5*01 P (29) JIRA1106 BK068537✤ [1] 379635-380176
TRAV14TRAV14-6 TRAV14-6*01 P (30) JIRA1106 BK068537✤ [1] 408734-409290
TRAV14TRAV14-7 TRAV14-7*01 P (31) JIRA1106 BK068537✤ [1] 440706->440882 *
TRAV14TRAV14-8 TRAV14-8*01 F JIRA1106 BK068537✤ [1] 469724-470298
TRAV16TRAV16 TRAV16*01 F JIRA1106 BK068537✤ [1] 506250-506729
TRAV17TRAV17 TRAV17*01 F JIRA1106 BK068537✤ [1] 510235-510827
TRAV18TRAV18-1 TRAV18-1*01 P (4) JIRA1106 BK068537✤ [1] 41956-42233 *
TRAV18TRAV18-2 TRAV18-2*01 F JIRA1106 BK068537✤ [1] 516655-517173
TRAV19TRAV19 TRAV19*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 530176-530778
TRAV20TRAV20 TRAV20*01 F JIRA1106 BK068537✤ [1] 537325-537855
TRAV21TRAV21 TRAV21*01 F JIRA1106 BK068537✤ [1] 546992-547553
TRAV22TRAV22 TRAV22*01 ORF (32) JIRA1106 BK068537✤ [1] 562369-562949
TRAV23TRAV23 TRAV23*01 ORF (33) JIRA1106 BK068537✤ [1] 569778-570330
TRAV24TRAV24 TRAV24*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 586167-586710
TRAV25TRAV25 TRAV25*01 F JIRA1106 BK068537✤ [1] 592943-593564
TRAV26TRAV26 TRAV26*01 F (34)
RTPr
++
 JIRA1106 BK068537✤ [1] 638554-639339
TRAV27TRAV27 TRAV27*01 F (35)
RTPr
++
 JIRA1106 BK068537✤ [1] 606424-606963
TRAV28TRAV28 TRAV28*01 ORF (36) JIRA1106 BK068537✤ [1] 613178-613772
TRAV29TRAV29 TRAV29*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 618474-619044
TRAV30TRAV30 TRAV30*01 P (37) JIRA1106 BK068537✤ [1] 624244-624514 *
TRAV31TRAV31 TRAV31*01 P (38) JIRA1106 BK068537✤ [1] 626356-627099
TRAV32TRAV32 TRAV32*01 P (4) JIRA1106 BK068537✤ [1] 632130-632409 *
TRAV33TRAV33 TRAV33*01 F JIRA1106 BK068537✤ [1] 635498-636096
TRAV34TRAV34 TRAV34*01 F JIRA1106 BK068537✤ [1] 644940-645572
TRAV35TRAV35 TRAV35*01 F JIRA1106 BK068537✤ [1] 650584-651203
TRAV36TRAV36 TRAV36*01 F JIRA1106 BK068537✤ [1] 659104-659691
TRAV37TRAV37 TRAV37*01 ORF (27) JIRA1106 BK068537✤ [1] 684250-684825
TRAV38TRAV38-1 TRAV38-1*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 688908-689519
TRAV38TRAV38-2 TRAV38-2*01 F JIRA1106 BK068537✤ [1] 695649-696269
TRAV40TRAV40 TRAV40*01 F JIRA1106 BK068537✤ [1] 726536-727020
TRAV41TRAV41 TRAV41*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 729692-730453
TRAV43TRAV43-1 TRAV43-1*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 23848-24406
TRAV43TRAV43-2 TRAV43-2*01 F JIRA1106 BK068537✤ [1] 58333-58898
TRAV43TRAV43-3 TRAV43-3*01 P (14) JIRA1106 BK068537✤ [1] 84578-85135
TRAV43TRAV43-4 TRAV43-4*01 F JIRA1106 BK068537✤ [1] 123070-123627
TRAV43TRAV43-5 TRAV43-5*01 F JIRA1106 BK068537✤ [1] 147894-148447
TRAV43TRAV43-6 TRAV43-6*01 P (18) JIRA1106 BK068537✤ [1] 174900-175460
TRAV43TRAV43-7 TRAV43-7*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 201258-201813
TRAV43TRAV43-8 TRAV43-8*01 F JIRA1106 BK068537✤ [1] 231288-231845
TRAV43TRAV43-9 TRAV43-9*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 263454-264014
TRAV43TRAV43-10 TRAV43-10*01 ORF (39) JIRA1106 BK068537✤ [1] 299960-300505
TRAV43TRAV43-11 TRAV43-11*01 P (40) JIRA1106 BK068537✤ [1] 323617-324175
TRAV43TRAV43-12 TRAV43-12*01 F JIRA1106 BK068537✤ [1] 354954-355513
TRAV43TRAV43-13 TRAV43-13*01 F
RTPr
++
 JIRA1106 BK068537✤ [1] 403011-403554
TRAV43TRAV43-14 TRAV43-14*01 F JIRA1106 BK068537✤ [1] 427309-427865
TRAV43TRAV43-15 TRAV43-15*01 P (26) JIRA1106 BK068537✤ [1] 452239-452806
TRAV46TRAV46 TRAV46*01 P (41) JIRA1106 BK068537✤ [1] 793552-793992
TRAVATRAVA TRAVA*01 P (42) JIRA1106 BK068537✤ [1] 18432-19022
TRAVBTRAVB TRAVB*01 P (43) JIRA1106 BK068537✤ [1] 377783->377875 *

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. frameshifts in V-REGION: several insertions and deletions
  2. noncanonical V-NONAMER: ccccaaacc instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/93192928/ccs_A
  3. noncanonical V-HEPTAMER: cacagca instead of cacagtg, however this V-GENE has been found rearranged in m64131_200921_184114/80217427/ccs_A
  4. no L-PART1
  5. no INIT-CODON: Thr instead of Met, frameshift in L-PART2: insertion of 1 nt, frameshifts in V-REGION: several insertions and deletions
  6. no L-PART1, truncated pseudogene, no V-RS
  7. noncanonical V-NONAMER: gcacaaact instead of gtgcaaact
  8. no 2nd-CYS: Ser instead of Cys, noncanonical V-NONAMER: gcacaacct instead of gtgcaaact
  9. noncanonical V-NONAMER: gcagaaact instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/35457414/ccs_A
  10. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  11. noncanonical V-NONAMER: gcacaaatt instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/113508624/ccs_A
  12. noncanonical ACCEPTOR-SPLICE: nggnn instead of nagnn, however this V-GENE has been found rearranged in m64131_200921_184114/75237114/ccs_A
  13. several STOP-CODON in V-REGION, frameshifts in V-REGION: several insertions and deletions
  14. no INIT-CODON: Thr instead of Met
  15. STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 47
  16. noncanonical V-NONAMER: tctcaaacg instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/91884078/ccs_A
  17. truncated pseudogene, no V-RS, STOP-CODON in V-REGION: position 44
  18. STOP-CODON in V-REGION: position 99
  19. STOP-CODON in L-PART1
  20. truncated pseudogene, no V-RS, STOP-CODON in V-REGION: position 37
  21. no L-PART1, no L-PART2, truncated pseudogene
  22. no INIT-CODON: Ile instead of Met, frameshift in L-PART1: insertion of 1 nt causing defectuous DONOR-SPLICE, no CONSERVED-TRP: STOP-CODON instead of Trp
  23. frameshift in V-REGION: deletion of 1 nt in CDR2-IMGT
  24. noncanonical V-NONAMER: ctcaaacct instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/4852549/ccs_A
  25. noncanonical V-NONAMER: actcaaatg instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/85395106/ccs_A
  26. frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  27. noncanonical ACCEPTOR-SPLICE: nggnn instead of nagnn
  28. noncanonical V-NONAMER: acccatcaa instead of gtgcaaact
  29. frameshift in V-REGION: insertion of 1 nt in FR2-IMGT
  30. several STOP-CODON in V-REGION
  31. frameshift in L-PART2: deletion of 1 nt, frameshifts in V-REGION: several insertions and deletions, truncated pseudogene, no V-RS
  32. noncanonical DONOR-SPLICE: nga instead of ngt, noncanonical V-NONAMER: gcacaaacc instead of gtgcaaact
  33. noncanonical V-NONAMER: accaaacct instead of gtgcaaact
  34. noncanonical V-HEPTAMER: cacacta instead of cacagtg, noncanonical V-NONAMER: atacaagat instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/104596752/ccs_A
  35. noncanonical V-NONAMER: tcctgaacc instead of gtgcaaact, however this V-GENE has been found rearranged in m64131_200921_184114/9439657/ccs_A
  36. noncanonical V-NONAMER: agacctacc instead of gtgcaaact
  37. no INIT-CODON: STOP-CODON instead of Met, frameshift in V-REGION: deletion of 2 nt in FR2-IMGT, no V-RS
  38. no L-PART2, frameshifts in V-REGION: several insertions and deletions
  39. noncanonical V-HEPTAMER: caatgct instead of cacagtg
  40. no 1st-CYS: STOP-CODON instead of Cys, several STOP-CODON in V-REGION
  41. no INIT-CODON: Val instead of Met
  42. frameshift in L-PART1: insertion of 1 nt causing defectuous DONOR-SPLICE, degenerated pseudogene not assigned to subgroups with functional genes
  43. truncated pseudogene not assigned to subgroups with functional genes, no V-RS
IMGT references: ↑
  1. Manso T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 7, no. 50, 2022, pp. 1262-1272.