Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.

This article was also used for annotation:
Tanaka, A et al. “Sequence and diversity of bovine T-cell receptor beta-chain genes.” Immunogenetics vol. 32,4 (1990): 263-71. PMID: 1700762

Gene table of bovine (Bos taurus) TRBV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation
FctChromosomosal
localization
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
Secondary
accession
numbers
Clone namesBreedAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
TRBV1TRBV1 TRBV1*01 F 4 CM008171.2 Hereford IMGT000084 MAP 9664-10326
TRBV2TRBV2 TRBV2*01 (1) 4 CM008171.2 Hereford IMGT000084 MAP 93186-93674
TRBV3TRBV3 TRBV3*01 (2) 4 CM008171.2 Hereford IMGT000084 MAP 86229-86728
TRBV4TRBV4 TRBV4*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 90512-91006
TRBV5TRBV5-1 TRBV5-1*01 (3) 4 CM008171.2 Hereford IMGT000084 MAP 100855-101146 *
TRBV5TRBV5-2 TRBV5-2*01 F 4 CM008171.2 Hereford IMGT000084 MAP 107108-107624
TRBV5TRBV5-3 TRBV5-3*01 F 4 CM008171.2 Hereford IMGT000084 MAP 121368-121881
TRBV5TRBV5-4 TRBV5-4*01 (1) 4 CM008171.2 Hereford IMGT000084 MAP 127533-128047
TRBV5TRBV5-5 TRBV5-5*01 (4) 4 CM008171.2 Hereford IMGT000084 MAP 131463-131975
TRBV5TRBV5-5D TRBV5-5D*01 (4) 4 CM008171.2 Hereford IMGT000084 MAP 135925-136437
TRBV5TRBV5-6 TRBV5-6*01 F 4 CM008171.2 Hereford IMGT000084 MAP 143450-143965
TRBV5TRBV5-7 TRBV5-7*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 147908-148421
TRBV5TRBV5-8 TRBV5-8*01 (5) 4 CM008171.2 Hereford IMGT000084 MAP 151281-151788
TRBV5TRBV5-9 TRBV5-9*01 (5) 4 CM008171.2 Hereford IMGT000084 MAP 159647-160157
TRBV5TRBV5-10 TRBV5-10*01 (6) 4 CM008171.2 Hereford IMGT000084 MAP 163762-164258
TRBV5TRBV5-11 TRBV5-11*01 F 4 CM008171.2 Hereford IMGT000084 MAP 169734-170248
TRBV5TRBV5-11D TRBV5-11D*01 F 4 CM008171.2 Hereford IMGT000084 MAP 197605-198119
TRBV5TRBV5-12 TRBV5-12*01 F 4 CM008171.2 Hereford IMGT000084 MAP 173780-174277
TRBV5TRBV5-13 TRBV5-13*01 (5) 4 CM008171.2 Hereford IMGT000084 MAP 180638-181145
TRBV5TRBV5-13D TRBV5-13D*01 (5) 4 CM008171.2 Hereford IMGT000084 MAP 187592-188099
TRBV5TRBV5-14 TRBV5-14*01 (6) 4 CM008171.2 Hereford IMGT000084 MAP 191715-192211
TRBV5TRBV5-15 TRBV5-15*01 F 4 CM008171.2 Hereford IMGT000084 MAP 201649-202146
TRBV5TRBV5-16 TRBV5-16*01 (5) 4 CM008171.2 Hereford IMGT000084 MAP 208506-209013
TRBV5TRBV5-17 TRBV5-17*01 F 4 CM008171.2 Hereford IMGT000084 MAP 212625-213122
TRBV5TRBV5-18 TRBV5-18*01 (7) 4 CM008171.2 Hereford IMGT000084 MAP 220005-220518
TRBV5TRBV5-19 TRBV5-19*01 (5) 4 CM008171.2 Hereford IMGT000084 MAP 226759-227267
TRBV5TRBV5-20 TRBV5-20*01 F 4 CM008171.2 Hereford IMGT000084 MAP 230893-231390
TRBV5TRBV5-21 TRBV5-21*01 F 4 CM008171.2 Hereford IMGT000084 MAP 234989-235504
TRBV5TRBV5-22 TRBV5-22*01 F 4 CM008171.2 Hereford IMGT000084 MAP 256944-257450
TRBV6TRBV6-1 TRBV6-1*01 ORF (8) 4 CM008171.2 Hereford IMGT000084 MAP 117491-117959
TRBV6TRBV6-2 TRBV6-2*01 F 4 CM008171.2 Hereford IMGT000084 MAP 125296-125764
TRBV6TRBV6-3 TRBV6-3*01 (9) 4 CM008171.2 Hereford IMGT000084 MAP 129240-129709
TRBV6TRBV6-4 TRBV6-4*01 (10) 4 CM008171.2 Hereford IMGT000084 MAP 133692-134159
TRBV6TRBV6-5 TRBV6-5*01 (1) 4 CM008171.2 Hereford IMGT000084 MAP 138154-138621
TRBV6TRBV6-6 TRBV6-6*01 (11) 4 CM008171.2 Hereford IMGT000084 MAP 141286-141753
TRBV6TRBV6-7 TRBV6-7*01 (12) 4 CM008171.2 Hereford IMGT000084 MAP 149447-149914
TRBV6TRBV6-8 TRBV6-8*01 (13) 4 CM008171.2 Hereford IMGT000084 MAP 153259-153728
TRBV6TRBV6-9 TRBV6-9*01 F 4 CM008171.2 Hereford IMGT000084 MAP 154655-155124
TRBV6TRBV6-10 TRBV6-10*01 (14) 4 CM008171.2 Hereford IMGT000084 MAP 157942-158410
TRBV6TRBV6-11 TRBV6-11*01 F 4 CM008171.2 Hereford IMGT000084 MAP 161554-162023
TRBV6TRBV6-12 TRBV6-12*01 ORF (15) 4 CM008171.2 Hereford IMGT000084 MAP 167516-167985
TRBV6TRBV6-13 TRBV6-13*01 F 4 CM008171.2 Hereford IMGT000084 MAP 171607-172076
TRBV6TRBV6-14 TRBV6-14*01 ORF (16) 4 CM008171.2 Hereford IMGT000084 MAP 175642-176111
TRBV6TRBV6-15 TRBV6-15*01 F 4 CM008171.2 Hereford IMGT000084 MAP 178919-179387
TRBV6TRBV6-15D TRBV6-15D*01 F 4 CM008171.2 Hereford IMGT000084 MAP 185872-186340
TRBV6TRBV6-16 TRBV6-16*01 (4) 4 CM008171.2 Hereford IMGT000084 MAP 182549-183024
TRBV6TRBV6-17 TRBV6-17*01 ORF (17) 4 CM008171.2 Hereford IMGT000084 MAP 189505-189973
TRBV6TRBV6-18 TRBV6-18*01 ORF (15) 4 CM008171.2 Hereford IMGT000084 MAP 195379-195848
TRBV6TRBV6-19 TRBV6-19*01 F 4 CM008171.2 Hereford IMGT000084 MAP 199478-199947
TRBV6TRBV6-20 TRBV6-20*01 F 4 CM008171.2 Hereford IMGT000084 MAP 203512-203981
TRBV6TRBV6-21 TRBV6-21*01 F 4 CM008171.2 Hereford IMGT000084 MAP 206789-207257
TRBV6TRBV6-22 TRBV6-22*01 ORF (17) 4 CM008171.2 Hereford IMGT000084 MAP 210427-210895
TRBV6TRBV6-23 TRBV6-23*01 (18) 4 CM008171.2 Hereford IMGT000084 MAP 217999-218447
TRBV6TRBV6-24 TRBV6-24*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 221896-222365
TRBV6TRBV6-25 TRBV6-25*01 ORF (19) 4 CM008171.2 Hereford IMGT000084 MAP 225036-225503
TRBV6TRBV6-26 TRBV6-26*01 F 4 CM008171.2 Hereford IMGT000084 MAP 228690-229158
TRBV6TRBV6-27 TRBV6-27*01 F 4 CM008171.2 Hereford IMGT000084 MAP 232745-233214
TRBV6TRBV6-28 TRBV6-28*01 F 4 CM008171.2 Hereford IMGT000084 MAP 237484-237952
TRBV7TRBV7-1 TRBV7-1*01 F 4 CM008171.2 Hereford IMGT000084 MAP 240391-240875
TRBV7TRBV7-2 TRBV7-2*01 F 4 CM008171.2 Hereford IMGT000084 MAP 262005-262627
TRBV8TRBV8 TRBV8*01 (20) 4 CM008171.2 Hereford IMGT000084 MAP 244896-245418
TRBV10TRBV10 TRBV10*01 (21) 4 CM008171.2 Hereford IMGT000084 MAP 273838-274123 *
TRBV11TRBV11 TRBV11*01 (22) 4 CM008171.2 Hereford IMGT000084 MAP 279535-280030
TRBV12TRBV12-1 TRBV12-1*01 F 4 CM008171.2 Hereford IMGT000084 MAP 286517-286999
TRBV12TRBV12-2 TRBV12-2*01 F 4 CM008171.2 Hereford IMGT000084 MAP 301345-301826
TRBV13TRBV13 TRBV13*01 (23) 4 CM008171.2 Hereford IMGT000084 MAP 267204-267668
TRBV14TRBV14 TRBV14*01 F 4 CM008171.2 Hereford IMGT000084 MAP 303847-304314
TRBV15TRBV15 TRBV15*01 F 4 CM008171.2 Hereford IMGT000084 MAP 306146-306649
TRBV16TRBV16 TRBV16*01 (24) 4 CM008171.2 Hereford IMGT000084 MAP 310887-311375
TRBV18TRBV18-1 TRBV18-1*01 (25) 4 CM008171.2 Hereford IMGT000084 MAP 321989-322653
TRBV18TRBV18-2 TRBV18-2*01 (26) 4 CM008171.2 Hereford IMGT000084 MAP 354908-355577
TRBV18TRBV18-3 TRBV18-3*01 (25) 4 CM008171.2 Hereford IMGT000084 MAP 384335-385005
TRBV18TRBV18-4 TRBV18-4*01 (25) 4 CM008171.2 Hereford IMGT000084 MAP 449583-450253
TRBV19TRBV19-1 TRBV19-1*01 (27) 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 323974-324489
TRBV19TRBV19-2 TRBV19-2*01 (28) 4 CM008171.2 Hereford IMGT000084 MAP 356905-357420
TRBV19TRBV19-3 TRBV19-3*01 (29) 4 CM008171.2 Hereford IMGT000084 MAP 386320-386835
TRBV19TRBV19-4 TRBV19-4*01 (30) 4 CM008171.2 Hereford IMGT000084 MAP complement(444144-444434) *
TRBV19TRBV19-5 TRBV19-5*01 (31) 4 CM008171.2 Hereford IMGT000084 MAP 451583-452096
TRBV19TRBV19-6 TRBV19-6*01 ORF (32) 4 CM008171.2 Hereford IMGT000084 MAP 487939-488454
TRBV20TRBV20-1 TRBV20-1*01 F 4 CM008171.2 Hereford IMGT000084 MAP 327151-328005
TRBV20TRBV20-2 TRBV20-2*01 F 4 CM008171.2 Hereford IMGT000084 MAP 360054-360933
TRBV20TRBV20-3 TRBV20-3*01 F 4 CM008171.2 Hereford IMGT000084 MAP 389485-390337
TRBV20TRBV20-4 TRBV20-4*01 F 4 CM008171.2 Hereford IMGT000084 MAP complement(440597-441452)
TRBV20TRBV20-5 TRBV20-5*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 454753-455618
TRBV20TRBV20-6 TRBV20-6*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 491109-491975
TRBV21TRBV21-1 TRBV21-1*01 (33) 4 CM008171.2 Hereford IMGT000084 MAP 334528-335020
TRBV21TRBV21-2 TRBV21-2*01 F 4 CM008171.2 Hereford IMGT000084 MAP 339949-340416
TRBV21TRBV21-3 TRBV21-3*01 (34) 4 CM008171.2 Hereford IMGT000084 MAP 349953-350479
TRBV21TRBV21-4 TRBV21-4*01 (35) 4 CM008171.2 Hereford IMGT000084 MAP 367486-367987
TRBV21TRBV21-5 TRBV21-5*01 F 4 CM008171.2 Hereford IMGT000084 MAP 374208-374707
TRBV21TRBV21-6 TRBV21-6*01 F 4 CM008171.2 Hereford IMGT000084 MAP 379414-379900
TRBV21TRBV21-7 TRBV21-7*01 (36) 4 CM008171.2 Hereford IMGT000084 MAP 396480-396957
TRBV21TRBV21-8 TRBV21-8*01 (4) 4 CM008171.2 Hereford IMGT000084 MAP 407107-407593
TRBV21TRBV21-9 TRBV21-9*01 (37) 4 CM008171.2 Hereford IMGT000084 MAP 410558-411057
TRBV21TRBV21-10 TRBV21-10*01 (38) 4 CM008171.2 Hereford IMGT000084 MAP 415762-416239
TRBV21TRBV21-11 TRBV21-11*01 ORF (39) 4 CM008171.2 Hereford IMGT000084 MAP complement(418118-418614)
TRBV21TRBV21-12 TRBV21-12*01 F 4 CM008171.2 Hereford IMGT000084 MAP complement(428179-428646)
TRBV21TRBV21-13 TRBV21-13*01 (33) 4 CM008171.2 Hereford IMGT000084 MAP complement(433573-434065)
TRBV21TRBV21-14 TRBV21-14*01 (40) 4 CM008171.2 Hereford IMGT000084 MAP 462224-462716
TRBV21TRBV21-15 TRBV21-15*01 F 4 CM008171.2 Hereford IMGT000084 MAP 467620-468104
TRBV21TRBV21-16 TRBV21-16*01 F 4 CM008171.2 Hereford IMGT000084 MAP 476404-476892
TRBV21TRBV21-17 TRBV21-17*01 F 4 CM008171.2 Hereford IMGT000084 MAP 479728-480217
TRBV21TRBV21-18 TRBV21-18*01 F 4 CM008171.2 Hereford IMGT000084 MAP 499845-500336
TRBV21TRBV21-19 TRBV21-19*01 F 4 CM008171.2 Hereford IMGT000084 MAP 505236-505720
TRBV21TRBV21-20 TRBV21-20*01 (6) 4 CM008171.2 Hereford IMGT000084 MAP 512039-512524
TRBV21TRBV21-21 TRBV21-21*01 (41) 4 CM008171.2 Hereford IMGT000084 MAP 515476-515973
TRBV21TRBV21-22 TRBV21-22*01 F 4 CM008171.2 Hereford IMGT000084 MAP 520271-520760
TRBV21TRBV21-23 TRBV21-23*01 F 4 CM008171.2 Hereford IMGT000084 MAP 529305-529801
TRBV22TRBV22 TRBV22*01 F 4 CM008171.2 Hereford IMGT000084 MAP 534070-534576
TRBV23TRBV23 TRBV23*01 (5) 4 CM008171.2 Hereford IMGT000084 MAP 536046-536541
TRBV24TRBV24 TRBV24*01 (42) 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 543321-543832
TRBV25TRBV25 TRBV25*01 F 4 CM008171.2 Hereford IMGT000084 MAP 549089-549598
TRBV26TRBV26 TRBV26*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 550789-551305
TRBV27TRBV27 TRBV27*01 F 4 CM008171.2 Hereford IMGT000084 MAP 558012-558520
TRBV28TRBV28 TRBV28*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 563695-564406
TRBV29TRBV29-1 TRBV29-1*01 (13) 4 CM008171.2 Hereford IMGT000084 MAP 569409-570088
TRBV29TRBV29-2 TRBV29-2*01 F 4
RTPr
++
CM008171.2 Hereford IMGT000084 MAP 572489-573121
TRBV29TRBV29-3 TRBV29-3*01 F 4 CM008171.2 Hereford IMGT000084 MAP 574973-575610
TRBV29TRBV29-4 TRBV29-4*01 F 4 CM008171.2 Hereford IMGT000084 MAP 577447-578084
TRBV29TRBV29-5 TRBV29-5*01 F 4 CM008171.2 Hereford IMGT000084 MAP 579920-580554 Hereford AF453325 [1] <1-244 * (44)
TRBV30TRBV30 TRBV30*01 F 4 CM008171.2 Hereford IMGT000084 MAP complement(639514-640213)
TRBV30TRBV30 TRBV30*02 F 4 AF453325 [1] complement(56519-57218)
TRBVATRBVA TRBVA*01 (43) 4 CM008171.2 Hereford IMGT000084 MAP 80596->80738 *
TRBVBTRBVB TRBVB*01 (43) 4 CM008171.2 Hereford IMGT000084 MAP 314920->315000 *
IMGT notes:
  1. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  2. STOP-CODON at position 108 (last 3' codon of germline V-REGION) may disappear during rearrangements
  3. frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  4. frameshifts in V-REGION: several insertions and deletions
  5. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  6. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  7. STOP-CODON in V-REGION: position 48
  8. noncanonical V-NONAMER: gcaaaaagg instead of gcacaaacc
  9. STOP-CODON in V-REGION: position 40, frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  10. STOP-CODON in V-REGION: position 40, frameshifts in V-REGION: several insertions and deletions
  11. no INIT-CODON: Val instead of Met, frameshifts in V-REGION: several insertions and deletions
  12. frameshift in V-REGION: deletion of 1 nt in CDR2-IMGT
  13. frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  14. several STOP-CODON in V-REGION
  15. noncanonical DONOR-SPLICE: ngc instead of ngt, noncanonical V-HEPTAMER: cacggag instead of cacagtg
  16. noncanonical V-HEPTAMER: catggcg instead of cacagtg
  17. noncanonical V-NONAMER: gcaaaaaaa instead of gcacaaacc
  18. several STOP-CODON in V-REGION, no CONSERVED-TRP: STOP-CODON instead of Trp
  19. no 2nd-CYS: Ser instead of Cys
  20. no INIT-CODON: Thr instead of Met, frameshifts in V-REGION: several insertions and deletions
  21. no L-PART1, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  22. frameshift in L-PART2, STOP-CODON in V-REGION: position 22
  23. no INIT-CODON: Gln instead of Met, no DONOR-SPLICE, frameshift in L-PART2: insertion of 1 nt, several STOP-CODON in V-REGION, frameshifts in V-REGION: several insertions and deletions
  24. no INIT-CODON: Thr instead of Met
  25. STOP-CODON in L-PART1, no DONOR-SPLICE, several STOP-CODON in V-REGION, no CONSERVED-TRP: AA 41 is missing, frameshift in V-REGION: insertion of 1 nt in CDR2-IMGT
  26. STOP-CODON in L-PART1, frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, no DONOR-SPLICE, several STOP-CODON in V-REGION, no CONSERVED-TRP: AA 41 is missing, frameshift in V-REGION: insertion of 1 nt in CDR2-IMGT
  27. noncanonical V-NONAMER: acacaaatg instead of gcacaaacc, however this V-GENE has been found rearranged
  28. STOP-CODON in L-PART1
  29. STOP-CODON in V-REGION: position 25
  30. no DONOR-SPLICE, no L-PART2, frameshifts in V-REGION: several insertions and deletions
  31. STOP-CODON in V-REGION: position 57, frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  32. noncanonical V-NONAMER: acacaaatg instead of gcacaaacc
  33. frameshift in L-PART1: insertion of 1 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 17
  34. no INIT-CODON: Val instead of Met, frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, no L-PART2, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  35. frameshift in L-PART1: insertion of 8 nt causing defectuous DONOR-SPLICE
  36. frameshift in L-PART1: insertion of 1 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 13 nt in FR1-IMGT
  37. STOP-CODON in V-REGION: position 44
  38. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, no DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  39. unexpected V-SPACER length: 19 nt instead of 23 nt
  40. frameshift in L-PART1: insertion of 1 nt causing defectuous DONOR-SPLICE
  41. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE
  42. no INIT-CODON: Ile instead of Met
  43. truncated pseudogene not assigned to subgroups with functional genes
  44. partial V-REGION in 5'
IMGT references:
  1. Conrad M.L. et al., Genomic sequencing of the bovine T cell receptor beta locus, Vet. Immunol. Immunopathol, vol. 87, no. 3-4, 2002, pp. 439-441. DOI: 10.1016/S0165-2427(02)00093-4