Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of dog (Canis lupus familiaris) TRGC IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
TRGC1 TRGC1*01 ORF (1) 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 20957-21274 boxer AAEX02028369 [1] complement(88782-89099)
TRGC1 TRGC1*01 ORF (1) 18 EX2B CM000018.3 boxer BK065027✤ [2,3] MAP 31493-31540 boxer AAEX02028369 [1] complement(78516-78563)
TRGC1 TRGC1*01 ORF (1) 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 33455-33594 boxer AAEX02028369 [1] complement(76462-76601)
TRGC2 TRGC2*01 F 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 78049-78375 boxer AAEX02028369 [1] complement(31681-32007)
TRGC2 TRGC2*01 F 18 EX2A CM000018.3 boxer BK065027✤ [2,3] MAP 80266-80391 boxer AAEX02028369 [1] complement(29665-29790)
TRGC2 TRGC2*01 F 18 EX2B CM000018.3 boxer BK065027✤ [2,3] MAP 89314-89361 boxer AAEX02028369 [1] complement(20695-20742)
TRGC2 TRGC2*01 F 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 90500-90639 boxer AAEX02028369 [1] complement(19417-19556)
TRGC3 TRGC3*01 F 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 130344-130673 boxer AAEX02028368 [1] complement(84840-85169)
TRGC3 TRGC3*01 F 18 EX2A CM000018.3 boxer BK065027✤ [2,3] MAP 132659-132784 boxer AAEX02028368 [1] complement(82729-82854)
TRGC3 TRGC3*01 F 18 EX2B CM000018.3 boxer BK065027✤ [2,3] MAP 140123-140170 boxer AAEX02028368 [1] complement(75343-75390)
TRGC3 TRGC3*01 F 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 142040-142179 boxer AAEX02028368 [1] complement(73334-73473)
TRGC4 TRGC4*01 F 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 191299-191625 boxer AAEX02028368 [1] complement(23888-24214)
TRGC4 TRGC4*01 F 18 EX2A CM000018.3 boxer BK065027✤ [2,3] MAP 194916-195041 boxer AAEX02028368 [1] complement(20472-20597)
TRGC4 TRGC4*01 F 18 EX2B CM000018.3 boxer BK065027✤ [2,3] 204916-204963 boxer AAEX02028368 [1] complement(10550-10597)
TRGC4 TRGC4*01 F 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 206590-206729 boxer AAEX02028368 [1] complement(8784-8923)
TRGC5 TRGC5*01 F 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 273502-273831 boxer AAEX02028366 [1] complement(31727-32056)
TRGC5 TRGC5*01 F 18 EX2A CM000018.3 boxer BK065027✤ [2,3] MAP 275770-275895 boxer AAEX02028366 [1] complement(29663-29788)
TRGC5 TRGC5*01 F 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 284321-284457 boxer AAEX02028366 [1] complement(21101-21237)
TRGC6 TRGC6*01 P (2) 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 333228-333557 boxer AAEX02028365 [1] complement(115175-115504)
TRGC6 TRGC6*01 P (2) 18 EX2B CM000018.3 boxer BK065027✤ [2,3] MAP 336792-336839 boxer AAEX02028365 [1] complement(111893-111940)
TRGC6 TRGC6*01 P (2) 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 339326-339465 boxer AAEX02028365 [1] complement(109267-109406)
TRGC7 TRGC7*01 F 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 411815-412144 boxer AAEX02028365 [1] complement(36588-36917)
TRGC7 TRGC7*01 F 18 EX2B CM000018.3 boxer BK065027✤ [2,3] MAP 415631-415678 boxer AAEX02028365 [1] complement(33054-33101)
TRGC7 TRGC7*01 F 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 417544-417683 boxer AAEX02028365 [1] complement(31049-31188)
TRGC8 TRGC8*01 F 18 EX1 CM000018.3 boxer BK065027✤ [2,3] MAP 440527-440856 boxer AAEX02028365 [1] complement(7876-8205)
TRGC8 TRGC8*01 F 18 EX2B CM000018.3 boxer BK065027✤ [2,3] MAP 444368-444403 boxer AAEX02028365 [1] complement(4329-4364)
TRGC8 TRGC8*01 F 18 EX3 CM000018.3 boxer BK065027✤ [2,3] MAP 446733-446872 boxer AAEX02028365 [1] complement(1860-1999)

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. noncanonical ACCEPTOR-SPLICE: naann instead of nagnn in EX3
  2. frameshift in EX3
IMGT references: ↑
  1. Lindblad-Toh K. et al., Genome sequence, comparative analysis and haplotype structure of the domestic dog, Nature, vol. 438, no. 7069, 2005, pp. 803-819. DOI: 10.1038/nature04338
  2. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
  3. Martin J. et al., Comprehensive annotation and evolutionary insights into the canine (Canis lupus familiaris) antigen receptor loci, Immunogenetics, vol. 70, no. 4, 2018, pp. 223-236. PUBMED: 28924718