Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of western lowland gorilla (Gorilla gorilla gorilla) TRAJ IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation
FctChromosomosal
localization
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers
Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
Secondary
accession
numbers
Clone namesIsolateAccession
numbers
Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
TRAJ1 TRAJ1*01 ORF (1) (1) CM017861.1 Kamilah BK064837 [1] MAP 942448-942535 CM054596.1 KB3781 BK064839 [1] 944640-944727
CM054572.1 KB3781 BK064840 [1] 948236-948323
LT578329.1 Susie3 BK064838 [1] 959301-959388
TRAJ2 TRAJ2*01 ORF (2) (13) CM017861.1 Kamilah BK064837 [1] MAP 941480-941573 CM054596.1 KB3781 BK064839 [1] 943674-943767
CM054572.1 KB3781 BK064840 [1] 947270-947363
LT578329.1 Susie3 BK064838 [1] 958335-958428
TRAJ3 TRAJ3*01 F CM017861.1 Kamilah BK064837 [1] MAP 940574-940663 CM054596.1 KB3781 BK064839 [1] 942778-942867
CM054572.1 KB3781 BK064840 [1] 946374-946463
LT578329.1 Susie3 BK064838 [1] 957439-957528
TRAJ4 TRAJ4*01 F CM017861.1 Kamilah BK064837 [1] MAP 939594-939684 CM054596.1 KB3781 BK064839 [1] 941798-941888
CM054572.1 KB3781 BK064840 [1] 945394-945484
LT578329.1 Susie3 BK064838 [1] 956460-956550
TRAJ5 TRAJ5*01 F CM017861.1 Kamilah BK064837 [1] MAP 937646-937733 CM054596.1 KB3781 BK064839 [1] 939848-939935
CM054572.1 KB3781 BK064840 [1] 943444-943531
LT578329.1 Susie3 BK064838 [1] 954512-954599
TRAJ6 TRAJ6*01 F CM017861.1 Kamilah BK064837 [1] MAP 936472-936561 CM054596.1 KB3781 BK064839 [1] 938674-938763
CM054572.1 KB3781 BK064840 [1] 942270-942359
LT578329.1 Susie3 BK064838 [1] 953338-953427
TRAJ7 TRAJ7*01 F CM017861.1 Kamilah BK064837 [1] MAP 935024-935108 CM054596.1 KB3781 BK064839 [1] 937226-937310
CM054572.1 KB3781 BK064840 [1] 940821-940905
LT578329.1 Susie3 BK064838 [1] 951890-951974
TRAJ8 TRAJ8*01 F CM017861.1 Kamilah BK064837 [1] MAP 933548-933635 CM054596.1 KB3781 BK064839 [1] 935750-935837
LT578329.1 Susie3 BK064838 [1] 950414-950501
TRAJ8 TRAJ8*02 F CM054572.1 KB3781 BK064840 [1] MAP 939345-939432
TRAJ9 TRAJ9*01 F CM017861.1 Kamilah BK064837 [1] MAP 932956-933044 CM054596.1 KB3781 BK064839 [1] 935158-935246
CM054572.1 KB3781 BK064840 [1] 938753-938841
LT578329.1 Susie3 BK064838 [1] 949822-949910
TRAJ10 TRAJ10*01 F CM017861.1 Kamilah BK064837 [1] MAP 930902-930993 CM054596.1 KB3781 BK064839 [1] 933097-933188
CM054572.1 KB3781 BK064840 [1] 936692-936783
LT578329.1 Susie3 BK064838 [1] 947756-947847
TRAJ11 TRAJ11*01 F CM017861.1 Kamilah BK064837 [1] MAP 929907-929994 CM054596.1 KB3781 BK064839 [1] 932102-932189
CM054572.1 KB3781 BK064840 [1] 935697-935784
LT578329.1 Susie3 BK064838 [1] 946761-946848
TRAJ12 TRAJ12*01 F CM017861.1 Kamilah BK064837 [1] MAP 929344-929431 CM054596.1 KB3781 BK064839 [1] 931539-931626
CM054572.1 KB3781 BK064840 [1] 935134-935221
LT578329.1 Susie3 BK064838 [1] 946198-946285
TRAJ13 TRAJ13*01 F CM017861.1 Kamilah BK064837 [1] MAP 928481-928571 CM054596.1 KB3781 BK064839 [1] 930676-930766
CM054572.1 KB3781 BK064840 [1] 934271-934361
LT578329.1 Susie3 BK064838 [1] 945335-945425
TRAJ14 TRAJ14*01 ORF (3) (14) CM017861.1 Kamilah BK064837 [1] MAP 927732-927811 CM054596.1 KB3781 BK064839 [1] 929927-930006
CM054572.1 KB3781 BK064840 [1] 933522-933601
LT578329.1 Susie3 BK064838 [1] 944586-944665
TRAJ15 TRAJ15*01 F CM017861.1 Kamilah BK064837 [1] MAP 927034-927121 CM054596.1 KB3781 BK064839 [1] 929229-929316
CM054572.1 KB3781 BK064840 [1] 932824-932911
LT578329.1 Susie3 BK064838 [1] 943888-943975
TRAJ16 TRAJ16*01 ORF (4) (4) CM017861.1 Kamilah BK064837 [1] MAP 925941-926028 CM054596.1 KB3781 BK064839 [1] 928136-928223
CM054572.1 KB3781 BK064840 [1] 931731-931818
LT578329.1 Susie3 BK064838 [1] 942795-942882
TRAJ17 TRAJ17*01 F CM017861.1 Kamilah BK064837 [1] MAP 924573-924663 CM054596.1 KB3781 BK064839 [1] 926768-926858
CM054572.1 KB3781 BK064840 [1] 930363-930453
LT578329.1 Susie3 BK064838 [1] 941427-941517
TRAJ18 TRAJ18*01 F CM017861.1 Kamilah BK064837 [1] MAP 923379-923472 CM054596.1 KB3781 BK064839 [1] 925574-925667
CM054572.1 KB3781 BK064840 [1] 929169-929262
LT578329.1 Susie3 BK064838 [1] 940233-940326
TRAJ19 TRAJ19*01 ORF (5) (5) CM017861.1 Kamilah BK064837 [1] MAP 922989-923079 CM054596.1 KB3781 BK064839 [1] 925184-925274
CM054572.1 KB3781 BK064840 [1] 928779-928869
LT578329.1 Susie3 BK064838 [1] 939843-939933
TRAJ20 TRAJ20*01 F CM017861.1 Kamilah BK064837 [1] MAP 922054-922138 CM054596.1 KB3781 BK064839 [1] 924249-924333
LT578329.1 Susie3 BK064838 [1] 938908-938992
TRAJ20 TRAJ20*02 F CM054572.1 KB3781 BK064840 [1] MAP 927844-927928
TRAJ21 TRAJ21*01 F CM017861.1 Kamilah BK064837 [1] MAP 921330-921412 CM054596.1 KB3781 BK064839 [1] 923525-923607
CM054572.1 KB3781 BK064840 [1] 927120-927202
LT578329.1 Susie3 BK064838 [1] 938184-938266
TRAJ22 TRAJ22*01 F CM017861.1 Kamilah BK064837 [1] MAP 919765-919855 CM054596.1 KB3781 BK064839 [1] 921966-922056
CM054572.1 KB3781 BK064840 [1] 925558-925648
LT578329.1 Susie3 BK064838 [1] 936624-936714
TRAJ23 TRAJ23*01 F CM017861.1 Kamilah BK064837 [1] MAP 918141-918231 CM054596.1 KB3781 BK064839 [1] 920342-920432
CM054572.1 KB3781 BK064840 [1] 923934-924024
LT578329.1 Susie3 BK064838 [1] 935001-935091
TRAJ24 TRAJ24*01 F CM017861.1 Kamilah BK064837 [1] MAP 917694-917784 CM054596.1 KB3781 BK064839 [1] 919895-919985
CM054572.1 KB3781 BK064840 [1] 923487-923577
LT578329.1 Susie3 BK064838 [1] 934554-934644
TRAJ25 TRAJ25*01 F CM017861.1 Kamilah BK064837 [1] MAP 916537-916624 CM054596.1 KB3781 BK064839 [1] 918738-918825
CM054572.1 KB3781 BK064840 [1] 922330-922417
LT578329.1 Susie3 BK064838 [1] 933398-933485
TRAJ26 TRAJ26*01 F CM017861.1 Kamilah BK064837 [1] MAP 916171-916258 CM054596.1 KB3781 BK064839 [1] 918372-918459
TRAJ26 TRAJ26*02 (6) LT578329.1 Susie3 BK064838 [1] MAP 933033-933119
TRAJ26 TRAJ26*03 ORF (3) CM054572.1 KB3781 BK064840 [1] MAP 921964-922051
TRAJ27 TRAJ27*01 F CM017861.1 Kamilah BK064837 [1] MAP 913999-914085 CM054596.1 KB3781 BK064839 [1] 916200-916286
LT578329.1 Susie3 BK064838 [1] 930862-930948
TRAJ27 TRAJ27*02 F CM054572.1 KB3781 BK064840 [1] MAP 919796-919882
TRAJ28 TRAJ28*01 F CM017861.1 Kamilah BK064837 [1] MAP 913349-913442 CM054596.1 KB3781 BK064839 [1] 915550-915643
LT578329.1 Susie3 BK064838 [1] 930212-930305
TRAJ28 TRAJ28*02 F CM054572.1 KB3781 BK064840 [1] MAP 919152-919245
TRAJ29 TRAJ29*01 F CM017861.1 Kamilah BK064837 [1] MAP 911667-911754 CM054596.1 KB3781 BK064839 [1] 913869-913956
CM054572.1 KB3781 BK064840 [1] 917481-917568
LT578329.1 Susie3 BK064838 [1] 928532-928619
TRAJ30 TRAJ30*01 F CM017861.1 Kamilah BK064837 [1] MAP 910585-910669 CM054596.1 KB3781 BK064839 [1] 912788-912872
LT578329.1 Susie3 BK064838 [1] 927452-927536
TRAJ30 TRAJ30*02 F CM054572.1 KB3781 BK064840 [1] MAP 916400-916484
TRAJ31 TRAJ31*01 F CM017861.1 Kamilah BK064837 [1] MAP 908698-908782 CM054596.1 KB3781 BK064839 [1] 910901-910985
CM054572.1 KB3781 BK064840 [1] 914512-914596
LT578329.1 Susie3 BK064838 [1] 925566-925650
TRAJ32 TRAJ32*01 F CM017861.1 Kamilah BK064837 [1] MAP 907092-907185 CM054596.1 KB3781 BK064839 [1] 909295-909388
CM054572.1 KB3781 BK064840 [1] 912904-912997
LT578329.1 Susie3 BK064838 [1] 923960-924053
TRAJ33 TRAJ33*01 F CM017861.1 Kamilah BK064837 [1] MAP 906357-906441 CM054596.1 KB3781 BK064839 [1] 908560-908644
CM054572.1 KB3781 BK064840 [1] 912169-912253
LT578329.1 Susie3 BK064838 [1] 923226-923310
TRAJ34 TRAJ34*01 F CM017861.1 Kamilah BK064837 [1] MAP 905433-905518 CM054596.1 KB3781 BK064839 [1] 907636-907721
LT578329.1 Susie3 BK064838 [1] 922302-922387
TRAJ34 TRAJ34*02 F CM054572.1 KB3781 BK064840 [1] MAP 911235-911320
TRAJ35 TRAJ35*01 F CM017861.1 Kamilah BK064837 [1] MAP 904401-904487 CM054596.1 KB3781 BK064839 [1] 906592-906678
CM054572.1 KB3781 BK064840 [1] 910207-910293
LT578329.1 Susie3 BK064838 [1] 921262-921348
TRAJ36 TRAJ36*01 F CM017861.1 Kamilah BK064837 [1] MAP 902868-902954 CM054596.1 KB3781 BK064839 [1] 905061-905147
CM054572.1 KB3781 BK064840 [1] 908674-908760
LT578329.1 Susie3 BK064838 [1] 919732-919818
TRAJ37 TRAJ37*01 F CM017861.1 Kamilah BK064837 [1] MAP 901507-901596 CM054596.1 KB3781 BK064839 [1] 903700-903789
CM054572.1 KB3781 BK064840 [1] 907313-907402
LT578329.1 Susie3 BK064838 [1] 918371-918460
TRAJ38 TRAJ38*01 F CM017861.1 Kamilah BK064837 [1] MAP 899987-900076 CM054596.1 KB3781 BK064839 [1] 902179-902268
LT578329.1 Susie3 BK064838 [1] 916850-916939
TRAJ38 TRAJ38*02 F CM054572.1 KB3781 BK064840 [1] MAP 905793-905882
TRAJ39 TRAJ39*01 F CM017861.1 Kamilah BK064837 [1] MAP 899357-899447 CM054596.1 KB3781 BK064839 [1] 901551-901641
CM054572.1 KB3781 BK064840 [1] 905163-905253
LT578329.1 Susie3 BK064838 [1] 916220-916310
TRAJ40 TRAJ40*01 F CM017861.1 Kamilah BK064837 [1] MAP 897444-897532 CM054596.1 KB3781 BK064839 [1] 899638-899726
LT578329.1 Susie3 BK064838 [1] 914308-914396
TRAJ40 TRAJ40*02 F CM054572.1 KB3781 BK064840 [1] MAP 903250-903338
TRAJ41 TRAJ41*01 F CM017861.1 Kamilah BK064837 [1] MAP 895412-895501 CM054596.1 KB3781 BK064839 [1] 897606-897695
TRAJ41 TRAJ41*02 F LT578329.1 Susie3 BK064838 [1] MAP 912276-912365
TRAJ41 TRAJ41*03 ORF (7) CM054572.1 KB3781 BK064840 [1] MAP 901218-901307
TRAJ42 TRAJ42*01 F CM017861.1 Kamilah BK064837 [1] MAP 894642-894735 CM054596.1 KB3781 BK064839 [1] 896836-896929
CM054572.1 KB3781 BK064840 [1] 900448-900541
LT578329.1 Susie3 BK064838 [1] 911506-911599
TRAJ43 TRAJ43*01 F CM017861.1 Kamilah BK064837 [1] MAP 893672-893753 CM054596.1 KB3781 BK064839 [1] 895867-895948
CM054572.1 KB3781 BK064840 [1] 899479-899560
LT578329.1 Susie3 BK064838 [1] 910537-910618
TRAJ44 TRAJ44*01 F CM017861.1 Kamilah BK064837 [1] MAP 892580-892670 CM054572.1 KB3781 BK064840 [1] 898387-898477
TRAJ44 TRAJ44*02 F LT578329.1 Susie3 BK064838 [1] MAP 909445-909535 CM054596.1 KB3781 BK064839 [1] 894775-894865
TRAJ45 TRAJ45*01 F CM017861.1 Kamilah BK064837 [1] MAP 891684-891777 CM054596.1 KB3781 BK064839 [1] 893879-893972
CM054572.1 KB3781 BK064840 [1] 897491-897584
LT578329.1 Susie3 BK064838 [1] 908550-908643
TRAJ46 TRAJ46*01 F CM017861.1 Kamilah BK064837 [1] MAP 891162-891252
TRAJ46 TRAJ46*02 (6) LT578329.1 Susie3 BK064838 [1] MAP 908030-908119
TRAJ46 TRAJ46*03 F CM054596.1 KB3781 BK064839 [1] MAP 893357-893447
TRAJ46 TRAJ46*04 F CM054572.1 KB3781 BK064840 [1] MAP 896969-897059
TRAJ47 TRAJ47*01 F CM017861.1 Kamilah BK064837 [1] MAP 890608-890692 CM054596.1 KB3781 BK064839 [1] 892804-892888
CM054572.1 KB3781 BK064840 [1] 896416-896500
LT578329.1 Susie3 BK064838 [1] 907479-907563
TRAJ48 TRAJ48*01 F CM017861.1 Kamilah BK064837 [1] MAP 888245-888335 CM054596.1 KB3781 BK064839 [1] 890441-890531
CM054572.1 KB3781 BK064840 [1] 894061-894151
TRAJ48 TRAJ48*02 F LT578329.1 Susie3 BK064838 [1] MAP 905124-905214
TRAJ49 TRAJ49*01 F CM017861.1 Kamilah BK064837 [1] MAP 887258-887339 CM054596.1 KB3781 BK064839 [1] 889458-889539
CM054572.1 KB3781 BK064840 [1] 893071-893152
LT578329.1 Susie3 BK064838 [1] 904134-904215
TRAJ50 TRAJ50*01 F CM017861.1 Kamilah BK064837 [1] MAP 886376-886463 CM054596.1 KB3781 BK064839 [1] 888577-888664
TRAJ50 TRAJ50*02 F LT578329.1 Susie3 BK064838 [1] MAP 903253-903340 CM054572.1 KB3781 BK064840 [1] 892190-892277
TRAJ51 TRAJ51*01 (8) (8) CM017861.1 Kamilah BK064837 [1] MAP 884966-885056 CM054596.1 KB3781 BK064839 [1] 887167-887257
CM054572.1 KB3781 BK064840 [1] 890780-890870
TRAJ51 TRAJ51*02 (8) (8) LT578329.1 Susie3 BK064838 [1] MAP 901843-901933
TRAJ52 TRAJ52*01 F CM017861.1 Kamilah BK064837 [1] MAP 884010-884106 CM054596.1 KB3781 BK064839 [1] 886211-886307
CM054572.1 KB3781 BK064840 [1] 889824-889920
LT578329.1 Susie3 BK064838 [1] 900902-900998
TRAJ53 TRAJ53*01 F CM017861.1 Kamilah BK064837 [1] MAP 880789-880882 CM054596.1 KB3781 BK064839 [1] 882990-883083
CM054572.1 KB3781 BK064840 [1] 886602-886695
LT578329.1 Susie3 BK064838 [1] 897680-897773
TRAJ54 TRAJ54*01 F CM017861.1 Kamilah BK064837 [1] MAP 880073-880160 CM054596.1 KB3781 BK064839 [1] 882274-882361
CM054572.1 KB3781 BK064840 [1] 885886-885973
LT578329.1 Susie3 BK064838 [1] 896964-897051
TRAJ55 TRAJ55*01 (9) (9) CM017861.1 Kamilah BK064837 [1] MAP 879483-879567 CM054596.1 KB3781 BK064839 [1] 881684-881768
CM054572.1 KB3781 BK064840 [1] 885296-885380
LT578329.1 Susie3 BK064838 [1] 896374-896458
TRAJ56 TRAJ56*01 F CM017861.1 Kamilah BK064837 [1] MAP 877307-877396 CM054596.1 KB3781 BK064839 [1] 879508-879597
CM054572.1 KB3781 BK064840 [1] 883119-883208
LT578329.1 Susie3 BK064838 [1] 894197-894286
TRAJ57 TRAJ57*01 F CM017861.1 Kamilah BK064837 [1] MAP 876660-876750 CM054596.1 KB3781 BK064839 [1] 878861-878951
LT578329.1 Susie3 BK064838 [1] 893550-893640
TRAJ57 TRAJ57*02 F CM054572.1 KB3781 BK064840 [1] MAP 882472-882562
TRAJ58 TRAJ58*01 (10) CM017861.1 Kamilah BK064837 [1] MAP 875495-875585 CM054596.1 KB3781 BK064839 [1] 877696-877786
CM054572.1 KB3781 BK064840 [1] 881307-881397
LT578329.1 Susie3 BK064838 [1] 892385-892475
TRAJ59 TRAJ59*01 ORF (11) (11) CM017861.1 Kamilah BK064837 [1] MAP 874334-874430 CM054596.1 KB3781 BK064839 [1] 876535-876631
CM054572.1 KB3781 BK064840 [1] 880146-880242
LT578329.1 Susie3 BK064838 [1] 891224-891320
TRAJ60 TRAJ60*01 (9) (9) CM017861.1 Kamilah BK064837 [1] MAP 874097-874180 CM054596.1 KB3781 BK064839 [1] 876298-876381
CM054572.1 KB3781 BK064840 [1] 879909-879992
LT578329.1 Susie3 BK064838 [1] 890987-891070
TRAJ61 TRAJ61*01 ORF (12) (12) CM017861.1 Kamilah BK064837 [1] MAP 873108-873195 CM054596.1 KB3781 BK064839 [1] 875311-875398
CM054572.1 KB3781 BK064840 [1] 878920-879007
LT578329.1 Susie3 BK064838 [1] 889998-890085

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes:
  1. noncanonical J-HEPTAMER: gggcatg instead of cactgtg, noncanonical J-NONAMER: attctgtaa instead of ggtttttgt
  2. noncanonical J-HEPTAMER: tacggta instead of cactgtg, noncanonical J-NONAMER: agtttctgc instead of ggtttttgt
  3. noncanonical J-MOTIF: FGXR instead of FGXG
  4. noncanonical J-MOTIF: FAXG instead of FGXG
  5. noncanonical J-HEPTAMER: gacagat instead of cactgtg, noncanonical J-NONAMER: aaatgaggt instead of ggtttttgt
  6. frameshift in J-REGION : deletion of 1 nt
  7. noncanonical J-MOTIF: FDXG instead of FGXG
  8. STOP-CODON in J-REGION, no DONOR-SPLICE
  9. STOP-CODON in J-REGION
  10. the first codon of the germline J-REGION is a STOP-CODON which may disappear during rearrangements
  11. noncanonical DONOR-SPLICE: nct instead of ngt
  12. noncanonical DONOR-SPLICE: ngc instead of ngt, noncanonical J-MOTIF: FGXN instead of FGXG
  13. noncanonical J-NONAMER: agtttctgc instead of ggtttttgt, noncanonical J-HEPTAMER: tatggtg instead of cactgtg
  14. noncanonical J-MOTIF: FGXN instead of FGXG
IMGT references:
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068