"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.
Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).
IMGT subgroup | IMGT gene name | IMGT allele name | Fct | Score for IMGT allele confirmation | Chromosomosal localization | R T Pr | IMGT/LIGM-DB reference sequences | IMGT/LIGM-DB sequences from the literature | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Isolate | Clone names | Accession numbers | Positions in the sequence (L-V-GENE-UNIT) or V-REGION (*) | Secondary accession numbers | Isolate | Clone names | Accession numbers | Positions in the sequence (L-V-GENE-UNIT) or V-REGION (*) | |||||||
TRAV1 | TRAV1 | TRAV1*01 | F | BK064754✤ [1] MAP | 9417-10040 | MEF-2018 | IMGT000071 | 136045-136668 | |||||||
TRAV4 | TRAV4 | TRAV4*01 | F | BK064754✤ [1] MAP | 110959-111723 | MEF-2018 | IMGT000071 | 255805-256569 | |||||||
TRAV5 | TRAV5-1 | TRAV5-1*01 | F | BK064754✤ [1] MAP | 125221-125761 | MEF-2018 | IMGT000071 | 276630-277170 | |||||||
TRAV5 | TRAV5-2 | TRAV5-2*01 | P (1) | MEF-2018 | IMGT000071 | 672463-672723 * | |||||||||
TRAV5 | TRAV5-3 | TRAV5-3*01 | P (2) | BK064754✤ [1] MAP | 492408-492946 | MEF-2018 | IMGT000071 | 684909-685447 | |||||||
TRAV8 | TRAV8-1 | TRAV8-1*01 | F | MEF-2018 | IMGT000071 | 291758-292239 | |||||||||
TRAV8 | TRAV8-1 | TRAV8-1*02 | F | BK064754✤ [1] MAP | 140458-140939 | ||||||||||
TRAV8 | TRAV8-2 | TRAV8-2*01 | F | BK064754✤ [1] MAP | 400528-401038 | MEF-2018 | IMGT000071 | 584966-585476 | |||||||
TRAV8 | TRAV8-3 | TRAV8-3*01 | F | BK064754✤ [1] MAP | 575085-575581 | MEF-2018 | IMGT000071 | 769567-770063 | |||||||
TRAV8 | TRAV8-4 | TRAV8-4*01 | P (3) | MEF-2018 | IMGT000071 | 1071957-1072241 * | |||||||||
TRAV8 | TRAV8-5 | TRAV8-5*01 | P (4) | MEF-2018 | IMGT000071 | complement(1074317-1074824) | |||||||||
TRAV8 | TRAV8-6 | TRAV8-6*01 | F | BK064754✤ [1] MAP | 834079-834589 | MEF-2018 | IMGT000071 | 1095284-1095794 | |||||||
TRAV8 | TRAV8-7 | TRAV8-7*01 | P (3) | MEF-2018 | IMGT000071 | 1100531-1100799 * | |||||||||
TRAV9 | TRAV9-1 | TRAV9-1*01 | F | MEF-2018 | IMGT000071 | 301400-301880 | |||||||||
TRAV9 | TRAV9-1 | TRAV9-1*02 | F | BK064754✤ [1] MAP | 149020-149500 | ||||||||||
TRAV9 | TRAV9-2 | TRAV9-2*01 | F | BK064754✤ [1] MAP | 172649-173159 | MEF-2018 | IMGT000071 | 325070-325580 | |||||||
TRAV9 | TRAV9-3 | TRAV9-3*01 | F | MEF-2018 | IMGT000071 | 343797-344322 | |||||||||
TRAV9 | TRAV9-3 | TRAV9-3*02 | F | BK064754✤ [1] MAP | 191167-191692 | NMR 29 | IMGT000081 | 233603-234128 | |||||||
TRAV9 | TRAV9-4 | TRAV9-4*01 | ORF (5) | BK064754✤ [1] MAP | 211083-212050 | MEF-2018 | IMGT000071 | 363742-364709 | |||||||
TRAV9 | TRAV9-5 | TRAV9-5*01 | F | MEF-2018 | IMGT000071 | 656079-656583 | |||||||||
TRAV9 | TRAV9-5 | TRAV9-5*02 | F | BK064754✤ [1] MAP | 471455-471959 | NMR 29 | IMGT000081 | 529592-530096 | |||||||
TRAV9 | TRAV9-6 | TRAV9-6*01 | F | BK064754✤ [1] MAP | 630271-630757 | MEF-2018 | IMGT000071 | 830430-830916 | |||||||
TRAV9 | TRAV9-7 | TRAV9-7*01 | F | BK064754✤ [1] MAP | 679701-680217 | MEF-2018 | IMGT000071 | 879882-880398 | |||||||
TRAV9 | TRAV9-8 | TRAV9-8*01 | F | MEF-2018 | IMGT000071 | 898141-898620 | |||||||||
TRAV9 | TRAV9-8 | TRAV9-8*02 | F | BK064754✤ [1] MAP | 697969-698448 | NMR 29 | IMGT000081 | 757154-757633 | |||||||
TRAV10 | TRAV10 | TRAV10*01 | P (6) | BK064754✤ [1] MAP | 514477-515058 | MEF-2018 | IMGT000071 | 708766-709347 | |||||||
TRAV11 | TRAV11-1 | TRAV11-1*01 | F | BK064754✤ [1] MAP | 301922-302444 | MEF-2018 | IMGT000071 | 464469-464991 | |||||||
TRAV11 | TRAV11-2 | TRAV11-2*01 | P (7) | BK064754✤ [1] MAP | 634636-635188 | MEF-2018 | IMGT000071 | 835036-835314 * | |||||||
TRAV12 | TRAV12-1 | TRAV12-1*01 | P (8) | MEF-2018 | IMGT000071 | 391092-391649 | |||||||||
TRAV12 | TRAV12-2 | TRAV12-2*01 | F | MEF-2018 | IMGT000071 | 400299-400873 | |||||||||
TRAV12 | TRAV12-2 | TRAV12-2*02 | F | BK064754✤ [1] MAP | 238134-238711 | NMR 29 | IMGT000081 | 280574-281151 | |||||||
TRAV12 | TRAV12-3 | TRAV12-3*01 | F | BK064754✤ [1] MAP | 316336-316899 | MEF-2018 | IMGT000071 | 478788-479351 | |||||||
TRAV12 | TRAV12-4 | TRAV12-4*01 | F | BK064754✤ [1] MAP | 326995-327573 | MEF-2018 | IMGT000071 | 489458-490036 | |||||||
TRAV12 | TRAV12-5 | TRAV12-5*01 | F | MEF-2018 | IMGT000071 | 490766-491344 | |||||||||
TRAV12 | TRAV12-6 | TRAV12-6*01 | F | BK064754✤ [1] MAP | 521642-522202 | MEF-2018 | IMGT000071 | 715931-716491 | |||||||
TRAV12 | TRAV12-7 | TRAV12-7*01 | F | BK064754✤ [1] MAP | 532805-533348 | MEF-2018 | IMGT000071 | 727094-727637 | |||||||
TRAV12 | TRAV12-8 | TRAV12-8*01 | P (9) | MEF-2018 | IMGT000071 | 844963-845533 | |||||||||
TRAV12 | TRAV12-8 | TRAV12-8*02 | ORF (10) | BK064754✤ [1] MAP | 644802-645383 | NMR 29 | IMGT000081 | 703939-704520 | |||||||
TRAV12 | TRAV12-9 | TRAV12-9*01 | F | MEF-2018 | IMGT000071 | 905827-906415 | |||||||||
TRAV12 | TRAV12-9 | TRAV12-9*02 | P (11) | BK064754✤ [1] MAP | 705015-705593 | NMR 29 | IMGT000081 | 764199-764777 | |||||||
TRAV13 | TRAV13-1 | TRAV13-1*01 | P (12) | MEF-2018 | IMGT000071 | 336785->336985 * | |||||||||
TRAV13 | TRAV13-1 | TRAV13-1*02 | P (13) | BK064754✤ [1] MAP | 184175->184375 * | NMR 29 | IMGT000081 | 226609-226842 * | |||||||
TRAV13 | TRAV13-2 | TRAV13-2*01 | F | BK064754✤ [1] MAP | 202305-202842 | MEF-2018 | IMGT000071 | 354937-355474 | |||||||
TRAV13 | TRAV13-3 | TRAV13-3*01 | P (14) | BK064754✤ [1] MAP | 688757-689287 | MEF-2018 | IMGT000071 | 888929-889459 | |||||||
TRAV14 | TRAV14-1 | TRAV14-1*01 | P (15) | BK064754✤ [1] MAP | 205866-206411 | MEF-2018 | IMGT000071 | 358525-359070 | |||||||
TRAV14 | TRAV14-2 | TRAV14-2*01 | F | BK064754✤ [1] MAP | 511612-512158 | MEF-2018 | IMGT000071 | 705901-706447 | |||||||
TRAV14 | TRAV14-3 | TRAV14-3*01 | P (16) | MEF-2018 | IMGT000071 | 826824-827332 | |||||||||
TRAV14 | TRAV14-3 | TRAV14-3*02 | P (16) | BK064754✤ [1] MAP | 626646-627161 | NMR 29 | IMGT000081 | 685838-686353 | |||||||
TRAV14 | TRAV14-4 | TRAV14-4*01 | P (17) | BK064754✤ [1] MAP | 693973-694528 | MEF-2018 | IMGT000071 | 894145-894700 | |||||||
TRAV17 | TRAV17-1 | TRAV17-1*01 | ORF (18) | BK064754✤ [1] MAP | 255055-255592 | MEF-2018 | IMGT000071 | 417522-418059 | |||||||
TRAV17 | TRAV17-2 | TRAV17-2*01 | F | BK064754✤ [1] MAP | 544290-544808 | MEF-2018 | IMGT000071 | 738616-739134 | |||||||
TRAV18 | TRAV18-1 | TRAV18-1*01 | ORF (19) | BK064754✤ [1] MAP | 269580-270063 | MEF-2018 | IMGT000071 | 432047-432530 | |||||||
TRAV18 | TRAV18-2 | TRAV18-2*01 | P (20) | BK064754✤ [1] MAP | 552422-553093 | MEF-2018 | IMGT000071 | 746906-747574 | |||||||
TRAV19 | TRAV19-1 | TRAV19-1*01 | F | BK064754✤ [1] MAP | 260205-260806 | MEF-2018 | IMGT000071 | 422672-423273 | |||||||
TRAV19 | TRAV19-2 | TRAV19-2*01 | P (21) | BK064754✤ [1] MAP | 366212-367119 | MEF-2018 | IMGT000071 | 545032-545939 | |||||||
TRAV19 | TRAV19-3 | TRAV19-3*01 | P (22) | BK064754✤ [1] MAP | 549205-549793 | MEF-2018 | IMGT000071 | 743531-744119 | |||||||
TRAV21 | TRAV21 | TRAV21*01 | P (23) | BK064754✤ [1] MAP | 368909->369186 * | MEF-2018 | IMGT000071 | 547732-548009 * | |||||||
TRAV22 | TRAV22-1 | TRAV22-1*01 | F | BK064754✤ [1] MAP | 283932-284466 | MEF-2018 | IMGT000071 | 446398-446932 | |||||||
TRAV22 | TRAV22-2 | TRAV22-2*01 | F | BK064754✤ [1] MAP | 382423-382950 | MEF-2018 | IMGT000071 | 566868-567395 | |||||||
TRAV22 | TRAV22-3 | TRAV22-3*01 | P (24) | MEF-2018 | IMGT000071 | 640292-640820 | |||||||||
TRAV22 | TRAV22-3 | TRAV22-3*02 | P (24) | BK064754✤ [1] MAP | 455942-456470 | NMR 29 | IMGT000081 | 514078-514606 | |||||||
TRAV22 | TRAV22-4 | TRAV22-4*01 | F | BK064754✤ [1] MAP | 557454-558011 | MEF-2018 | IMGT000071 | 751935-752492 | |||||||
TRAV22 | TRAV22-5 | TRAV22-5*01 | P (25) | MEF-2018 | IMGT000071 | 947073-947623 | |||||||||
TRAV22 | TRAV22-6 | TRAV22-6*01 | P (26) | BK064754✤ [1] MAP | 746317-746871 | MEF-2018 | IMGT000071 | 960257-960805 | |||||||
TRAV23 | TRAV23-1 | TRAV23-1*01 | P (27) | BK064754✤ [1] MAP | 462190-462726 | MEF-2018 | IMGT000071 | 646541-647077 | |||||||
TRAV23 | TRAV23-2 | TRAV23-2*01 | F | MEF-2018 | IMGT000071 | 787219-787746 | |||||||||
TRAV23 | TRAV23-2 | TRAV23-2*02 | F | BK064754✤ [1] MAP | 592876-593403 | NMR 29 | IMGT000081 | 652136-652663 | |||||||
TRAV23 | TRAV23-3 | TRAV23-3*01 | F | BK064754✤ [1] MAP | 653759-654292 | MEF-2018 | IMGT000071 | 853870-854403 | |||||||
TRAV23 | TRAV23-4 | TRAV23-4*01 | F | BK064754✤ [1] MAP | 764049-764600 | MEF-2018 | IMGT000071 | 984594-985145 | |||||||
TRAV23 | TRAV23-5 | TRAV23-5*01 | P (3) | MEF-2018 | IMGT000071 | 991905-992179 * | |||||||||
TRAV23 | TRAV23-6 | TRAV23-6*01 | P (28) | BK064754✤ [1] MAP | <388216-388483 * | ||||||||||
TRAV25 | TRAV25-1 | TRAV25-1*01 | P (29) | MEF-2018 | IMGT000071 | 760695-761296 | |||||||||
TRAV25 | TRAV25-1 | TRAV25-1*02 | ORF (30) | BK064754✤ [1] MAP | 566214-566815 | NMR 29 | IMGT000081 | 625693-626294 | |||||||
TRAV25 | TRAV25-2 | TRAV25-2*01 | P (31) | MEF-2018 | IMGT000071 | 1036687-1037285 | |||||||||
TRAV25 | TRAV25-3 | TRAV25-3*01 | F | BK064754✤ [1] MAP | 810712-811330 | MEF-2018 | IMGT000071 | 1048333-1048951 | |||||||
TRAV27 | TRAV27 | TRAV27*01 | P (32) | BK064754✤ [1] MAP | 411134-411856 | MEF-2018 | IMGT000071 | 595567-596289 | |||||||
TRAV28 | TRAV28 | TRAV28*01 | ORF (33) | BK064754✤ [1] MAP | 861709-862307 | MEF-2018 | IMGT000071 | 1127846-1128444 | |||||||
TRAV29 | TRAV29-1 | TRAV29-1*01 | F | BK064754✤ [1] MAP | 422122-422689 | MEF-2018 | IMGT000071 | 606570-607137 | |||||||
TRAV29 | TRAV29-2 | TRAV29-2*01 | P (3) | BK064754✤ [1] MAP | 881326-881589 * | MEF-2018 | IMGT000071 | 1147428-1147691 * | |||||||
TRAV30 | TRAV30 | TRAV30*01 | P (34) | BK064754✤ [1] MAP | 918950-919563 | TRAV30S1*01 | IMGT000071 | complement(1349056-1349669) | |||||||
TRAV31 | TRAV31 | TRAV31*01 | P (35) | BK064754✤ [1] MAP | 922371-922997 | TRAV31S1*01 | IMGT000071 | complement(1345623-1346249) | |||||||
TRAV32 | TRAV32 | TRAV32*01 | P (36) | BK064754✤ [1] MAP | 930123-930638 | TRAV32S1*01 | IMGT000071 | complement(1337890-1338405) | |||||||
TRAV33 | TRAV33 | TRAV33*01 | ORF (37) | BK064754✤ [1] MAP | 932488-933099 | TRAV33S1*01 | IMGT000071 | complement(1335431-1336042) | |||||||
TRAV34 | TRAV34-1 | TRAV34-1*01 | F | BK064754✤ [1] MAP | 436885-437498 | MEF-2018 | IMGT000071 | 621311-621924 | |||||||
TRAV34 | TRAV34-2 | TRAV34-2*01 | F | BK064754✤ [1] MAP | 954535-955157 | TRAV34S2*01 | IMGT000071 | complement(1313276-1313898) | |||||||
TRAV34 | TRAV34-2 | TRAV34-2*02 | F | TRAV34S2*02 | IMGT000081 | 1043355-1043974 | |||||||||
TRAV34 | TRAV34S1 | TRAV34S1*01 | P (38) | MEF-2018 | IMGT000071 | complement(1284914-1285521) | |||||||||
TRAV35 | TRAV35-1 | TRAV35-1*01 | F | BK064754✤ [1] MAP | 445269-445881 | MEF-2018 | IMGT000071 | 629695-630307 | |||||||
TRAV35 | TRAV35-2 | TRAV35-2*01 | F | BK064754✤ [1] MAP | 970979-971582 | TRAV35S1*01 | IMGT000071 | complement(1248924-1249527) | |||||||
TRAV35 | TRAV35-2 | TRAV35-2*02 | F | TRAV35S1*02 | IMGT000081 | 1059732-1060335 | |||||||||
TRAV35 | TRAV35S3 | TRAV35S3*01 | P (39) | MEF-2018 | IMGT000071 | 1301454-1302053 | |||||||||
TRAV36 | TRAV36 | TRAV36*01 | P (40) | BK064754✤ [1] MAP | 984423-984981 | TRAV36S1*01 | IMGT000071 | complement(1235506-1236064) | |||||||
TRAV36 | TRAV36 | TRAV36*02 | P (41) | TRAV36S1*02 | IMGT000081 | 1072979-1073537 | |||||||||
TRAV38 | TRAV38-1 | TRAV38-1*01 | P (4) | MEF-2018 | IMGT000071 | complement(1177728-1178387) | |||||||||
TRAV38 | TRAV38-2 | TRAV38-2*01 | F | BK064754✤ [1] MAP | 1010727-1011366 | TRAV38S3*01 | IMGT000071 | 1368095-1368734 | |||||||
TRAV38 | TRAV38-5 | TRAV38-5*01 | F | BK064754✤ [1] MAP | 1025919-1026568 | MEF-2018 | IMGT000071 | 1394317-1394966 | |||||||
TRAV38 | TRAV38S1 | TRAV38S1*01 | P (42) | MEF-2018 | IMGT000071 | complement(1192886-1193175) * | |||||||||
TRAV38 | TRAV38S2 | TRAV38S2*01 | F | MEF-2018 | IMGT000071 | complement(1194618-1195257) | |||||||||
TRAV39 | TRAV39 | TRAV39*01 | P (43) | BK064754✤ [1] MAP | 1052109-1052635 | MEF-2018 | IMGT000071 | 1420474-1421000 | |||||||
TRAV40 | TRAV40 | TRAV40*01 | P (44) | BK064754✤ [1] MAP | 1074634-1075258 | MEF-2018 | IMGT000071 | 1443007-1443631 | |||||||
TRAV41 | TRAV41 | TRAV41*01 | P (45) | BK064754✤ [1] MAP | 1078571-1079140 | MEF-2018 | IMGT000071 | 1446944-1447513 | |||||||
TRAV43 | TRAV43 | TRAV43*01 | F | BK064754✤ [1] MAP | 504595-505157 | MEF-2018 | IMGT000071 | 698885-699447 | |||||||
TRAV46 | TRAV46 | TRAV46*01 | P (46) | MEF-2018 | IMGT000071 | 1561208-1561454 * | |||||||||
TRAV46 | TRAV46 | TRAV46*02 | P (46) | BK064754✤ [1] MAP | 1177697->1177943 * | ||||||||||
TRAVA | TRAVA | TRAVA*01 | P (38) | MEF-2018 | IMGT000071 | 372303-372891 | |||||||||
TRAVA | TRAVA | TRAVA*02 | P (38) | BK064754✤ [1] MAP | 219784-220370 | NMR 29 | IMGT000081 | 262302-262888 | |||||||
TRAVB | TRAVB | TRAVB*01 | P (47) | BK064754✤ [1] MAP | 224238-224782 | MEF-2018 | IMGT000071 | 376790-377334 | |||||||
TRAVC | TRAVC | TRAVC*01 | P (48) | MEF-2018 | IMGT000071 | 534964-535225 * | |||||||||
TRAVC | TRAVC | TRAVC*02 | P (49) | BK064754✤ [1] MAP | 356161->356422 * | NMR 29 | IMGT000081 | 398448-398709 * | |||||||
TRAVD | TRAVD | TRAVD*01 | P (50) | MEF-2018 | IMGT000071 | 704229-704616 | |||||||||
TRAVD | TRAVD | TRAVD*02 | P (50) | BK064754✤ [1] MAP | 509940-510327 | NMR 29 | IMGT000081 | 567913-568299 | |||||||
TRAVE | TRAVE | TRAVE*01 | P (51) | BK064754✤ [1] MAP | 516872-517121 * | MEF-2018 | IMGT000071 | 711160-711409 * | |||||||
TRAVF | TRAVF | TRAVF*01 | P (52) | BK064754✤ [1] MAP | 726713-727528 | MEF-2018 | IMGT000071 | 927551-928366 |
✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.