"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.
Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
IMGT allele confirmation: A scoring system is employed to indicate the number of IMGT/LIGM-DB reference sequences and other sequences from the literature in which an IG or TR gene allele has been identified and annotated.
IMGT subgroup | IMGT gene name | IMGT allele name | Score for IMGT allele confirmation | Fct | Chromosomosal localization | R T Pr | IMGT/LIGM-DB reference sequences | IMGT/LIGM-DB sequences from the literature | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Clone names | Breed | Accession numbers | Positions in the sequence (L-V-GENE-UNIT) or V-REGION (*) | Secondary accession numbers | Clone names | Breed | Accession numbers | Positions in the sequence (L-V-GENE-UNIT) or V-REGION (*) | |||||||||||||
TRAV3 | TRAV3 | TRAV3*01 | P (1) | JIRA1106 | BK068537✤ [1,2] | 9828-10287 | |||||||||||||||
TRAV5 | TRAV5 | TRAV5*01 | F (2) |
|
JIRA1106 | BK068537✤ [1,2] | 28742-29288 | ||||||||||||||
TRAV6 | TRAV6 | TRAV6*01 | F (3) |
|
JIRA1106 | BK068537✤ [1,2] | 35533-36544 | ||||||||||||||
TRAV8 | TRAV8-1 | TRAV8-1*01 | P (4) | JIRA1106 | BK068537✤ [1,2] | 22223-22506 * | |||||||||||||||
TRAV8 | TRAV8-2 | TRAV8-2*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 501111-501650 | ||||||||||||||
TRAV8 | TRAV8-3 | TRAV8-3*01 | P (5) | JIRA1106 | BK068537✤ [1,2] | 558889-559376 | |||||||||||||||
TRAV9 | TRAV9-1 | TRAV9-1*01 | P (6) | JIRA1106 | BK068537✤ [1,2] | 44221-44498 * | |||||||||||||||
TRAV9 | TRAV9-2 | TRAV9-2*01 | F | JIRA1106 | BK068537✤ [1,2] | 68172-68668 | |||||||||||||||
TRAV9 | TRAV9-3 | TRAV9-3*01 | F | JIRA1106 | BK068537✤ [1,2] | 76925-77423 | |||||||||||||||
TRAV9 | TRAV9-4 | TRAV9-4*01 | F | JIRA1106 | BK068537✤ [1,2] | 113023-113520 | |||||||||||||||
TRAV9 | TRAV9-5 | TRAV9-5*01 | F | JIRA1106 | BK068537✤ [1,2] | 139877-140375 | |||||||||||||||
TRAV9 | TRAV9-6 | TRAV9-6*01 | F | JIRA1106 | BK068537✤ [1,2] | 158426-158923 | |||||||||||||||
TRAV9 | TRAV9-7 | TRAV9-7*01 | ORF (7) | JIRA1106 | BK068537✤ [1,2] | 168062-168559 | |||||||||||||||
TRAV9 | TRAV9-8 | TRAV9-8*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 193840-194336 | ||||||||||||||
TRAV9 | TRAV9-9 | TRAV9-9*01 | ORF (8) | JIRA1106 | BK068537✤ [1,2] | 225463-225961 | |||||||||||||||
TRAV9 | TRAV9-10 | TRAV9-10*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 248398-248895 | ||||||||||||||
TRAV9 | TRAV9-11 | TRAV9-11*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 288386-288883 | ||||||||||||||
TRAV9 | TRAV9-12 | TRAV9-12*01 | F | JIRA1106 | BK068537✤ [1,2] | 316641-317139 | |||||||||||||||
TRAV9 | TRAV9-13 | TRAV9-13*01 | F (9) |
|
JIRA1106 | BK068537✤ [1,2] | 331409-331906 | ||||||||||||||
TRAV9 | TRAV9-14 | TRAV9-14*01 | P (10) | JIRA1106 | BK068537✤ [1,2] | 348093-348589 | |||||||||||||||
TRAV9 | TRAV9-15 | TRAV9-15*01 | F | JIRA1106 | BK068537✤ [1,2] | 384487-384985 | |||||||||||||||
TRAV9 | TRAV9-16 | TRAV9-16*01 | F (11) |
|
JIRA1106 | BK068537✤ [1,2] | 416094-416592 | ||||||||||||||
TRAV9 | TRAV9-17 | TRAV9-17*01 | P (1) | JIRA1106 | BK068537✤ [1,2] | 443181-443693 | |||||||||||||||
TRAV9 | TRAV9-18 | TRAV9-18*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 465485-465985 | ||||||||||||||
TRAV9 | TRAV9-19 | TRAV9-19*01 | F (12) |
|
JIRA1106 | BK068537✤ [1,2] | 476368-476869 | ||||||||||||||
TRAV10 | TRAV10 | TRAV10*01 | P (1) | JIRA1106 | BK068537✤ [1,2] | 485106-485708 | |||||||||||||||
TRAV11 | TRAV11 | TRAV11*01 | P (13) | JIRA1106 | BK068537✤ [1,2] | 490637-491194 | |||||||||||||||
TRAV12 | TRAV12 | TRAV12*01 | P (14) |
|
JIRA1106 | BK068537✤ [1,2] | 498713-499292 | ||||||||||||||
TRAV13 | TRAV13-1 | TRAV13-1*01 | P (15) | JIRA1106 | BK068537✤ [1,2] | 90553-91097 | |||||||||||||||
TRAV13 | TRAV13-2 | TRAV13-2*01 | F (16) |
|
JIRA1106 | BK068537✤ [1,2] | 102488-103032 | ||||||||||||||
TRAV13 | TRAV13-3 | TRAV13-3*01 | P (17) | JIRA1106 | BK068537✤ [1,2] | 129805->129972 * | |||||||||||||||
TRAV13 | TRAV13-4 | TRAV13-4*01 | P (18) | JIRA1106 | BK068537✤ [1,2] | 152042-152586 | |||||||||||||||
TRAV13 | TRAV13-5 | TRAV13-5*01 | P (19) | JIRA1106 | BK068537✤ [1,2] | 181335-181876 | |||||||||||||||
TRAV13 | TRAV13-6 | TRAV13-6*01 | P (20) | JIRA1106 | BK068537✤ [1,2] | 207489->207626 * | |||||||||||||||
TRAV13 | TRAV13-7 | TRAV13-7*01 | P (21) | JIRA1106 | BK068537✤ [1,2] | <214817-215000 * | |||||||||||||||
TRAV13 | TRAV13-8 | TRAV13-8*01 | P (22) | JIRA1106 | BK068537✤ [1,2] | 235909-236452 | |||||||||||||||
TRAV13 | TRAV13-9 | TRAV13-9*01 | P (1) | JIRA1106 | BK068537✤ [1,2] | 269496-270046 | |||||||||||||||
TRAV13 | TRAV13-10 | TRAV13-10*01 | P (23) | JIRA1106 | BK068537✤ [1,2] | 276459-276999 | |||||||||||||||
TRAV13 | TRAV13-11 | TRAV13-11*01 | F (24) |
|
JIRA1106 | BK068537✤ [1,2] | 305816-306338 | ||||||||||||||
TRAV13 | TRAV13-12 | TRAV13-12*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 364985-365529 | ||||||||||||||
TRAV13 | TRAV13-13 | TRAV13-13*01 | F (25) |
|
JIRA1106 | BK068537✤ [1,2] | 407574-408102 | ||||||||||||||
TRAV13 | TRAV13-14 | TRAV13-14*01 | P (26) | JIRA1106 | BK068537✤ [1,2] | 434959-435488 | |||||||||||||||
TRAV13 | TRAV13-15 | TRAV13-15*01 | P (1) | JIRA1106 | BK068537✤ [1,2] | 458273-458807 | |||||||||||||||
TRAV14 | TRAV14-1 | TRAV14-1*01 | ORF (27) | JIRA1106 | BK068537✤ [1,2] | 71635-72197 | |||||||||||||||
TRAV14 | TRAV14-2 | TRAV14-2*01 | ORF (28) | JIRA1106 | BK068537✤ [1,2] | 161134-161706 | |||||||||||||||
TRAV14 | TRAV14-3 | TRAV14-3*01 | F | JIRA1106 | BK068537✤ [1,2] | 252077-252642 | |||||||||||||||
TRAV14 | TRAV14-4 | TRAV14-4*01 | P (1) | JIRA1106 | BK068537✤ [1,2] | 334875-335431 | |||||||||||||||
TRAV14 | TRAV14-5 | TRAV14-5*01 | P (29) | JIRA1106 | BK068537✤ [1,2] | 379635-380176 | |||||||||||||||
TRAV14 | TRAV14-6 | TRAV14-6*01 | P (30) | JIRA1106 | BK068537✤ [1,2] | 408734-409290 | |||||||||||||||
TRAV14 | TRAV14-7 | TRAV14-7*01 | P (31) | JIRA1106 | BK068537✤ [1,2] | 440706->440882 * | |||||||||||||||
TRAV14 | TRAV14-8 | TRAV14-8*01 | F | JIRA1106 | BK068537✤ [1,2] | 469724-470298 | |||||||||||||||
TRAV16 | TRAV16 | TRAV16*01 | F | JIRA1106 | BK068537✤ [1,2] | 506250-506729 | |||||||||||||||
TRAV17 | TRAV17 | TRAV17*01 | F | JIRA1106 | BK068537✤ [1,2] | 510235-510827 | |||||||||||||||
TRAV18 | TRAV18-1 | TRAV18-1*01 | P (4) | JIRA1106 | BK068537✤ [1,2] | 41956-42233 * | |||||||||||||||
TRAV18 | TRAV18-2 | TRAV18-2*01 | F | JIRA1106 | BK068537✤ [1,2] | 516655-517173 | |||||||||||||||
TRAV19 | TRAV19 | TRAV19*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 530176-530778 | ||||||||||||||
TRAV20 | TRAV20 | TRAV20*01 | F | JIRA1106 | BK068537✤ [1,2] | 537325-537855 | |||||||||||||||
TRAV21 | TRAV21 | TRAV21*01 | F | JIRA1106 | BK068537✤ [1,2] | 546992-547553 | |||||||||||||||
TRAV22 | TRAV22 | TRAV22*01 | ORF (32) | JIRA1106 | BK068537✤ [1,2] | 562369-562949 | |||||||||||||||
TRAV23 | TRAV23 | TRAV23*01 | ORF (33) | JIRA1106 | BK068537✤ [1,2] | 569778-570330 | |||||||||||||||
TRAV24 | TRAV24 | TRAV24*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 586167-586710 | ||||||||||||||
TRAV25 | TRAV25 | TRAV25*01 | F | JIRA1106 | BK068537✤ [1,2] | 592943-593564 | |||||||||||||||
TRAV26 | TRAV26 | TRAV26*01 | F (34) |
|
JIRA1106 | BK068537✤ [1,2] | 638554-639339 | ||||||||||||||
TRAV27 | TRAV27 | TRAV27*01 | F (35) |
|
JIRA1106 | BK068537✤ [1,2] | 606424-606963 | ||||||||||||||
TRAV28 | TRAV28 | TRAV28*01 | ORF (36) | JIRA1106 | BK068537✤ [1,2] | 613178-613772 | |||||||||||||||
TRAV29 | TRAV29 | TRAV29*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 618474-619044 | ||||||||||||||
TRAV30 | TRAV30 | TRAV30*01 | P (37) | JIRA1106 | BK068537✤ [1,2] | 624244-624514 * | |||||||||||||||
TRAV31 | TRAV31 | TRAV31*01 | P (38) | JIRA1106 | BK068537✤ [1,2] | 626356-627099 | |||||||||||||||
TRAV32 | TRAV32 | TRAV32*01 | P (4) | JIRA1106 | BK068537✤ [1,2] | 632130-632409 * | |||||||||||||||
TRAV33 | TRAV33 | TRAV33*01 | F | JIRA1106 | BK068537✤ [1,2] | 635498-636096 | |||||||||||||||
TRAV34 | TRAV34 | TRAV34*01 | F | JIRA1106 | BK068537✤ [1,2] | 644940-645572 | |||||||||||||||
TRAV35 | TRAV35 | TRAV35*01 | F | JIRA1106 | BK068537✤ [1,2] | 650584-651203 | |||||||||||||||
TRAV36 | TRAV36 | TRAV36*01 | F | JIRA1106 | BK068537✤ [1,2] | 659104-659691 | |||||||||||||||
TRAV37 | TRAV37 | TRAV37*01 | ORF (27) | JIRA1106 | BK068537✤ [1,2] | 684250-684825 | |||||||||||||||
TRAV38 | TRAV38-1 | TRAV38-1*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 688908-689519 | ||||||||||||||
TRAV38 | TRAV38-2 | TRAV38-2*01 | F | JIRA1106 | BK068537✤ [1,2] | 695649-696269 | |||||||||||||||
TRAV40 | TRAV40 | TRAV40*01 | F | JIRA1106 | BK068537✤ [1,2] | 726536-727020 | |||||||||||||||
TRAV41 | TRAV41 | TRAV41*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 729692-730453 | ||||||||||||||
TRAV43 | TRAV43-1 | TRAV43-1*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 23848-24406 | ||||||||||||||
TRAV43 | TRAV43-2 | TRAV43-2*01 | F | JIRA1106 | BK068537✤ [1,2] | 58333-58898 | |||||||||||||||
TRAV43 | TRAV43-3 | TRAV43-3*01 | P (14) | JIRA1106 | BK068537✤ [1,2] | 84578-85135 | |||||||||||||||
TRAV43 | TRAV43-4 | TRAV43-4*01 | F | JIRA1106 | BK068537✤ [1,2] | 123070-123627 | |||||||||||||||
TRAV43 | TRAV43-5 | TRAV43-5*01 | F | JIRA1106 | BK068537✤ [1,2] | 147894-148447 | |||||||||||||||
TRAV43 | TRAV43-6 | TRAV43-6*01 | P (18) | JIRA1106 | BK068537✤ [1,2] | 174900-175460 | |||||||||||||||
TRAV43 | TRAV43-7 | TRAV43-7*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 201258-201813 | ||||||||||||||
TRAV43 | TRAV43-8 | TRAV43-8*01 | F | JIRA1106 | BK068537✤ [1,2] | 231288-231845 | |||||||||||||||
TRAV43 | TRAV43-9 | TRAV43-9*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 263454-264014 | ||||||||||||||
TRAV43 | TRAV43-10 | TRAV43-10*01 | ORF (39) | JIRA1106 | BK068537✤ [1,2] | 299960-300505 | |||||||||||||||
TRAV43 | TRAV43-11 | TRAV43-11*01 | P (40) | JIRA1106 | BK068537✤ [1,2] | 323617-324175 | |||||||||||||||
TRAV43 | TRAV43-12 | TRAV43-12*01 | F | JIRA1106 | BK068537✤ [1,2] | 354954-355513 | |||||||||||||||
TRAV43 | TRAV43-13 | TRAV43-13*01 | F |
|
JIRA1106 | BK068537✤ [1,2] | 403011-403554 | ||||||||||||||
TRAV43 | TRAV43-14 | TRAV43-14*01 | F | JIRA1106 | BK068537✤ [1,2] | 427309-427865 | |||||||||||||||
TRAV43 | TRAV43-15 | TRAV43-15*01 | P (26) | JIRA1106 | BK068537✤ [1,2] | 452239-452806 | |||||||||||||||
TRAV46 | TRAV46 | TRAV46*01 | P (41) | JIRA1106 | BK068537✤ [1,2] | 793552-793992 | |||||||||||||||
TRAVA | TRAVA | TRAVA*01 | P (42) | JIRA1106 | BK068537✤ [1,2] | 18432-19022 | |||||||||||||||
TRAVB | TRAVB | TRAVB*01 | P (43) | JIRA1106 | BK068537✤ [1,2] | 377783->377875 * |
✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.