Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

In the realm of IMGT allele confirmation, a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Domestic ferret (Mustela putorius furo) IGHV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation
Chromosomosal
localization
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
BreedClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
Secondary
accession
numbers
BreedClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGHV1IGHV1-1 IGHV1-1*01 (1) JIRA1106 BK063796 [1] 839030-839502
IGHV1IGHV1-38 IGHV1-38*01 F JIRA1106 BK063796 [1] 327870-328343
IGHV1IGHV1-55 IGHV1-55*01 F JIRA1106 BK063796 [1] 121209-121682
IGHV1IGHV1-59 IGHV1-59*01 F JIRA1106 BK063796 [1] 65725-66198
IGHV3IGHV3-3 IGHV3-3*01 ORF (2) JIRA1106 BK063796 [1] complement(812211-812705)
IGHV3IGHV3-4 IGHV3-4*01 F JIRA1106 BK063796 [1] 795171-795665
IGHV3IGHV3-6 IGHV3-6*01 (3) JIRA1106 BK063796 [1] 771285-771781
IGHV3IGHV3-7 IGHV3-7*01 F JIRA1106 BK063796 [1] 765898-766390
IGHV3IGHV3-8 IGHV3-8*01 (4) JIRA1106 BK063796 [1] 759199-759693
IGHV3IGHV3-10 IGHV3-10*01 (5) JIRA1106 BK063796 [1] 745948-746240 *
IGHV3IGHV3-11 IGHV3-11*01 F JIRA1106 BK063796 [1] 716073-716568
IGHV3IGHV3-12 IGHV3-12*01 (6) JIRA1106 BK063796 [1] 700517-701003
IGHV3IGHV3-13 IGHV3-13*01 F JIRA1106 BK063796 [1] 694512-695006
IGHV3IGHV3-15 IGHV3-15*01 (1) JIRA1106 BK063796 [1] 670335-670830
IGHV3IGHV3-16 IGHV3-16*01 F JIRA1106 BK063796 [1] 658005-658497
IGHV3IGHV3-17 IGHV3-17*01 F JIRA1106 BK063796 [1] 651262-651756
IGHV3IGHV3-19 IGHV3-19*01 (7) JIRA1106 BK063796 [1] 637831-638124 *
IGHV3IGHV3-20 IGHV3-20*01 F JIRA1106 BK063796 [1] 607802-608297
IGHV3IGHV3-21 IGHV3-21*01 (8) JIRA1106 BK063796 [1] 577401-577924
IGHV3IGHV3-23 IGHV3-23*01 (9) JIRA1106 BK063796 [1] 545367-545862
IGHV3IGHV3-24 IGHV3-24*01 (10) JIRA1106 BK063796 [1] 530021-530513
IGHV3IGHV3-25 IGHV3-25*01 (1) JIRA1106 BK063796 [1] 525505-525995
IGHV3IGHV3-27 IGHV3-27*01 (1) JIRA1106 BK063796 [1] 496702-497197
IGHV3IGHV3-28 IGHV3-28*01 F JIRA1106 BK063796 [1] 490001-490495
IGHV3IGHV3-29 IGHV3-29*01 (11) JIRA1106 BK063796 [1] 483271-483765
IGHV3IGHV3-31 IGHV3-31*01 (5) JIRA1106 BK063796 [1] 470184-470476 *
IGHV3IGHV3-32 IGHV3-32*01 F JIRA1106 BK063796 [1] 444697-445192
IGHV3IGHV3-33 IGHV3-33*01 (6) JIRA1106 BK063796 [1] 429210-429696
IGHV3IGHV3-34 IGHV3-34*01 F JIRA1106 BK063796 [1] 422129-422623
IGHV3IGHV3-35 IGHV3-35*01 F JIRA1106 BK063796 [1] 390392-390884
IGHV3IGHV3-36 IGHV3-36*01 F JIRA1106 BK063796 [1] 371273-371767
IGHV3IGHV3-37 IGHV3-37*01 (5) JIRA1106 BK063796 [1] 358165-358460 *
IGHV3IGHV3-39 IGHV3-39*01 (12) JIRA1106 BK063796 [1] 317586-318083
IGHV3IGHV3-40 IGHV3-40*01 F JIRA1106 BK063796 [1] 313073-313567
IGHV3IGHV3-41 IGHV3-41*01 (6) JIRA1106 BK063796 [1] 307104-307596
IGHV3IGHV3-42 IGHV3-42*01 F JIRA1106 BK063796 [1] 297810-298304
IGHV3IGHV3-43 IGHV3-43*01 F JIRA1106 BK063796 [1] 280920-281413
IGHV3IGHV3-45 IGHV3-45*01 (1) JIRA1106 BK063796 [1] 254966-255461
IGHV3IGHV3-46 IGHV3-46*01 (13) JIRA1106 BK063796 [1] 248307-248778
IGHV3IGHV3-47 IGHV3-47*01 (6) JIRA1106 BK063796 [1] 246537-247023
IGHV3IGHV3-48 IGHV3-48*01 F JIRA1106 BK063796 [1] 240535-241029
IGHV3IGHV3-50 IGHV3-50*01 (14) JIRA1106 BK063796 [1] 206340-206635 *
IGHV3IGHV3-51 IGHV3-51*01 F JIRA1106 BK063796 [1] 172757-173250
IGHV3IGHV3-52 IGHV3-52*01 F JIRA1106 BK063796 [1] 142475-142969
IGHV3IGHV3-53 IGHV3-53*01 (15) JIRA1106 BK063796 [1] 138874-139166 *
IGHV3IGHV3-54 IGHV3-54*01 (16) JIRA1106 BK063796 [1] 131467-131956
IGHV3IGHV3-56 IGHV3-56*01 (17) JIRA1106 BK063796 [1] 105445->105642 *
IGHV3IGHV3-58 IGHV3-58*01 F JIRA1106 BK063796 [1] 71093-71587
IGHV3IGHV3-60 IGHV3-60*01 (18) JIRA1106 BK063796 [1] 59206-59695
IGHV3IGHV3-61 IGHV3-61*01 (6) JIRA1106 BK063796 [1] 47831-48323
IGHV3IGHV3-62 IGHV3-62*01 F JIRA1106 BK063796 [1] 28084-28578
IGHV3IGHV3-63 IGHV3-63*01 (19) JIRA1106 BK063796 [1] 9853-10310
IGHV4IGHV4-2 IGHV4-2*01 F JIRA1106 BK063796 [1] 827982-828448
IGHV7IGHV7-5 IGHV7-5*01 ORF (20) JIRA1106 BK063796 [1] 776940-777416
IGHV7IGHV7-14 IGHV7-14*01 ORF (20) JIRA1106 BK063796 [1] 675990-676466
IGHV7IGHV7-22 IGHV7-22*01 (21) JIRA1106 BK063796 [1] <552155-552396 *
IGHV7IGHV7-26 IGHV7-26*01 ORF (20) JIRA1106 BK063796 [1] 502303-502779
IGHV7IGHV7-44 IGHV7-44*01 ORF (20) JIRA1106 BK063796 [1] 259392-259868
IGHV7IGHV7-49 IGHV7-49*01 (22) JIRA1106 BK063796 [1] 211330-211806

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes:
  1. frameshifts in V-REGION: several insertions and deletions
  2. no CONSERVED-TRP: Arg instead of Cys
  3. STOP-CODON in V-REGION: position 80, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  4. STOP-CODON in V-REGION: position 67
  5. no L-PART1
  6. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  7. frameshift in V-REGION: insertion of 1 nt in FR1-IMGT, no L-PART1
  8. frameshift in L-PART2, frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  9. frameshifts in V-REGION: deletion of 1 nt and deletion of 1 nt in FR3-IMGT
  10. frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  11. STOP-CODON in L-PART1
  12. frameshift in L-PART1 causing defectuous DONOR-SPLICE
  13. frameshift in L-PART1 causing defectuous DONOR-SPLICE, no L-PART2, frameshift: deletion of 1 nt at pos 36
  14. frameshifts in V-REGION: several insertions and deletions, no V-RS
  15. no L-PART1, several STOP-CODON in V-REGION
  16. frameshift in V-REGION: deletion of 4 nt in FR2-IMGT, frameshift in L-PART1 causing defectuous DONOR-SPLICE
  17. frameshifts in V-REGION: several insertions and deletions, frameshift in L-PART1 causing defectuous DONOR-SPLICE, truncated pseudogene, no V-RS
  18. STOP-CODON in V-REGION: position 90
  19. STOP-CODON in V-REGION: position 66, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  20. noncanonical V-HEPTAMER: cacgatg instead of cacagtg
  21. no L-PART2, truncated pseudogene
  22. STOP-CODON in V-REGION: position 43, no INIT-CODON: Thr instead of Met
IMGT references:
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068