Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of domestic ferret (Mustela putorius furo) IGHV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGHV1IGHV1-1 IGHV1-1*01 P (1) JIRA1106 BK063796✤ [1] 839030-839502
IGHV1IGHV1-38 IGHV1-38*01 F JIRA1106 BK063796✤ [1] 327870-328343
IGHV1IGHV1-55 IGHV1-55*01 F JIRA1106 BK063796✤ [1] 121209-121682
IGHV1IGHV1-59 IGHV1-59*01 F JIRA1106 BK063796✤ [1] 65725-66198
IGHV3IGHV3-3 IGHV3-3*01 ORF (2) JIRA1106 BK063796✤ [1] complement(812211-812705)
IGHV3IGHV3-4 IGHV3-4*01 F JIRA1106 BK063796✤ [1] 795171-795665
IGHV3IGHV3-6 IGHV3-6*01 P (3) JIRA1106 BK063796✤ [1] 771285-771781
IGHV3IGHV3-7 IGHV3-7*01 F JIRA1106 BK063796✤ [1] 765898-766390
IGHV3IGHV3-8 IGHV3-8*01 P (4) JIRA1106 BK063796✤ [1] 759199-759693
IGHV3IGHV3-10 IGHV3-10*01 P (5) JIRA1106 BK063796✤ [1] 745948-746240 *
IGHV3IGHV3-11 IGHV3-11*01 F JIRA1106 BK063796✤ [1] 716073-716568
IGHV3IGHV3-12 IGHV3-12*01 P (6) JIRA1106 BK063796✤ [1] 700517-701003
IGHV3IGHV3-13 IGHV3-13*01 F JIRA1106 BK063796✤ [1] 694512-695006
IGHV3IGHV3-15 IGHV3-15*01 P (1) JIRA1106 BK063796✤ [1] 670335-670830
IGHV3IGHV3-16 IGHV3-16*01 F JIRA1106 BK063796✤ [1] 658005-658497
IGHV3IGHV3-17 IGHV3-17*01 F JIRA1106 BK063796✤ [1] 651262-651756
IGHV3IGHV3-19 IGHV3-19*01 P (7) JIRA1106 BK063796✤ [1] 637831-638124 *
IGHV3IGHV3-20 IGHV3-20*01 F JIRA1106 BK063796✤ [1] 607802-608297
IGHV3IGHV3-21 IGHV3-21*01 P (8) JIRA1106 BK063796✤ [1] 577401-577924
IGHV3IGHV3-23 IGHV3-23*01 P (9) JIRA1106 BK063796✤ [1] 545367-545862 JAADYL010000433 45911-46406
IGHV3IGHV3-24 IGHV3-24*01 P (10) JIRA1106 BK063796✤ [1] 530021-530513
IGHV3IGHV3-25 IGHV3-25*01 P (1) JIRA1106 BK063796✤ [1] 525505-525995
IGHV3IGHV3-27 IGHV3-27*01 P (1) JIRA1106 BK063796✤ [1] 496702-497197
IGHV3IGHV3-28 IGHV3-28*01 F JIRA1106 BK063796✤ [1] 490001-490495
IGHV3IGHV3-29 IGHV3-29*01 P (11) JIRA1106 BK063796✤ [1] 483271-483765
IGHV3IGHV3-31 IGHV3-31*01 P (5) JIRA1106 BK063796✤ [1] 470184-470476 *
IGHV3IGHV3-32 IGHV3-32*01 F JIRA1106 BK063796✤ [1] 444697-445192
IGHV3IGHV3-33 IGHV3-33*01 P (6) JIRA1106 BK063796✤ [1] 429210-429696
IGHV3IGHV3-34 IGHV3-34*01 F JIRA1106 BK063796✤ [1] 422129-422623
IGHV3IGHV3-35 IGHV3-35*01 F JIRA1106 BK063796✤ [1] 390392-390884
IGHV3IGHV3-36 IGHV3-36*01 F JIRA1106 BK063796✤ [1] 371273-371767
IGHV3IGHV3-37 IGHV3-37*01 P (5) JIRA1106 BK063796✤ [1] 358165-358460 *
IGHV3IGHV3-39 IGHV3-39*01 P (12) JIRA1106 BK063796✤ [1] 317586-318083
IGHV3IGHV3-40 IGHV3-40*01 F JIRA1106 BK063796✤ [1] 313073-313567
IGHV3IGHV3-41 IGHV3-41*01 P (6) JIRA1106 BK063796✤ [1] 307104-307596
IGHV3IGHV3-42 IGHV3-42*01 F JIRA1106 BK063796✤ [1] 297810-298304
IGHV3IGHV3-43 IGHV3-43*01 F JIRA1106 BK063796✤ [1] 280920-281413
IGHV3IGHV3-45 IGHV3-45*01 P (1) JIRA1106 BK063796✤ [1] 254966-255461
IGHV3IGHV3-46 IGHV3-46*01 P (13) JIRA1106 BK063796✤ [1] 248307-248778
IGHV3IGHV3-47 IGHV3-47*01 P (6) JIRA1106 BK063796✤ [1] 246537-247023
IGHV3IGHV3-48 IGHV3-48*01 F JIRA1106 BK063796✤ [1] 240535-241029
IGHV3IGHV3-50 IGHV3-50*01 P (14) JIRA1106 BK063796✤ [1] 206340-206635 *
IGHV3IGHV3-51 IGHV3-51*01 F JIRA1106 BK063796✤ [1] 172757-173250
IGHV3IGHV3-52 IGHV3-52*01 F JIRA1106 BK063796✤ [1] 142475-142969
IGHV3IGHV3-53 IGHV3-53*01 P (15) JIRA1106 BK063796✤ [1] 138874-139166 *
IGHV3IGHV3-54 IGHV3-54*01 P (16) JIRA1106 BK063796✤ [1] 131467-131956
IGHV3IGHV3-56 IGHV3-56*01 P (17) JIRA1106 BK063796✤ [1] 105445->105642 *
IGHV3IGHV3-58 IGHV3-58*01 F JIRA1106 BK063796✤ [1] 71093-71587
IGHV3IGHV3-60 IGHV3-60*01 P (18) JIRA1106 BK063796✤ [1] 59206-59695
IGHV3IGHV3-61 IGHV3-61*01 P (6) JIRA1106 BK063796✤ [1] 47831-48323
IGHV3IGHV3-62 IGHV3-62*01 F JIRA1106 BK063796✤ [1] 28084-28578
IGHV3IGHV3-63 IGHV3-63*01 P (19) JIRA1106 BK063796✤ [1] 9853-10310
IGHV3IGHV3S1 NL IGHV3S1*01 F JIRA1106 NW_025421394 complement(272987-273481)
IGHV3IGHV3S2 NL IGHV3S2*01 F JIRA1106 JAADYL010000686 complement(23206-23700)
IGHV3IGHV3S3 NL IGHV3S3*01 F JIRA1106 JAADYL010000433 387-881
IGHV3IGHV3S4 NL IGHV3S4*01 P (20) JIRA1106 JAADYL010000433 26987-27477
IGHV3IGHV3S5 NL IGHV3S5*01 F JIRA1106 JAADYL010000433 31821-32315
IGHV3IGHV3S6 NL IGHV3S6*01 P (21) JIRA1106 JAADYL010000592 134045-134543
IGHV3IGHV3S7 NL IGHV3S7*01 F JIRA1106 JAADYL010000592 200530-201022
IGHV3IGHV3S8 NL IGHV3S8*01 P (22) JIRA1106 JAADYL010000592 220113-220607
IGHV3IGHV3S9 NL IGHV3S9*01 P (23) JIRA1106 JAADYL010000592 247453-247931
IGHV3IGHV3S10 NL IGHV3S10*01 F JIRA1106 JAADYL010000592 316223-316713
IGHV3IGHV3S11 NL IGHV3S11*01 F JIRA1106 JAADYL010000592 374642-375136
IGHV3IGHV3S12 NL IGHV3S12*01 P (22) JIRA1106 JAADYL010000592 465150-465645
IGHV3IGHV3S13 NL IGHV3S13*01 F JIRA1106 IMGT000214 [2] 10001-10494
IGHV3IGHV3S14 NL IGHV3S14*01 F JIRA1106 WXYK01000935 40377-40850
IGHV3IGHV3S15 NL IGHV3S15*01 F JIRA1106 WXYK01000935 204427-204901
IGHV3IGHV3S16 NL IGHV3S16*01 F JIRA1106 WXYJ01000365 complement(150715-151207)
IGHV3IGHV3S17 NL IGHV3S17*01 F JIRA1106 WQNA01000461 [2] 59423-59917
IGHV3IGHV3S18 NL IGHV3S18*01 F JIRA1106 IMGT000213 [2] 9546-10040
IGHV4IGHV4-2 IGHV4-2*01 F JIRA1106 BK063796✤ [1] 827982-828448
IGHV7IGHV7-5 IGHV7-5*01 F
RTPr
++
 JIRA1106 BK063796✤ [1] 776940-777416
IGHV7IGHV7-14 IGHV7-14*01 F
RTPr
++
 JIRA1106 BK063796✤ [1] 675990-676466
IGHV7IGHV7-22 IGHV7-22*01 P (24) JIRA1106 BK063796✤ [1] <552155-552396 *
IGHV7IGHV7-26 IGHV7-26*01 F JIRA1106 BK063796✤ [1] 502303-502779
IGHV7IGHV7-44 IGHV7-44*01 F
RTPr
++
 JIRA1106 BK063796✤ [1] 259392-259868
IGHV7IGHV7-49 IGHV7-49*01 P (25) JIRA1106 BK063796✤ [1] 211330-211806
IGHV7IGHV7S1 NL IGHV7S1*01 P (26) JIRA1106 JAADYL010000433 52726-53195

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes: ↑
  1. frameshifts in V-REGION: several insertions and deletions
  2. no CONSERVED-TRP: Arg instead of Cys
  3. STOP-CODON in V-REGION: position 80, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  4. STOP-CODON in V-REGION: position 67
  5. no L-PART1
  6. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  7. frameshift in V-REGION: insertion of 1 nt in FR1-IMGT, no L-PART1
  8. frameshift in L-PART2, frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  9. frameshifts in V-REGION: deletion of 1 nt and deletion of 1 nt in FR3-IMGT
  10. frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  11. STOP-CODON in L-PART1
  12. frameshift in L-PART1 causing defectuous DONOR-SPLICE
  13. frameshift in L-PART1 causing defectuous DONOR-SPLICE, no L-PART2, frameshift: deletion of 1 nt at pos 36
  14. frameshifts in V-REGION: several insertions and deletions, no V-RS
  15. no L-PART1, several STOP-CODON in V-REGION
  16. frameshift in V-REGION: deletion of 4 nt in FR2-IMGT, frameshift in L-PART1 causing defectuous DONOR-SPLICE
  17. frameshifts in V-REGION: several insertions and deletions, frameshift in L-PART1 causing defectuous DONOR-SPLICE, truncated pseudogene, no V-RS
  18. STOP-CODON in V-REGION: position 90
  19. STOP-CODON in V-REGION: position 66, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  20. several STOP-CODON in V-REGION, frameshifts in V-REGION: several insertions and deletions
  21. frameshift in L-PART1: insertion of 5 nt causing defectuous DONOR-SPLICE, no ACCEPTOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  22. frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
  23. STOP-CODON in V-REGION: position 75
  24. no L-PART2, truncated pseudogene
  25. no INIT-CODON: Thr instead of Met, STOP-CODON in V-REGION: position 43
  26. several STOP-CODON in V-REGION
IMGT references: ↑
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068
  2. Schultz-Cherry S. et al., Ferret MHC Genome Assembly, Unpublished.