Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

In the realm of IMGT allele confirmation, a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Domestic ferret (Mustela putorius furo) IGKV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation
Chromosomosal
localization
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
BreedClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
Secondary
accession
numbers
BreedClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGKV1IGKV1-5 IGKV1-5*01 (1) JIRA1106 BK063797 [1] 637866-638444
IGKV1IGKV1-10 IGKV1-10*01 (2) JIRA1106 BK063797 [1] 602403-602974
IGKV1IGKV1-14 IGKV1-14*01 (3) JIRA1106 BK063797 [1] 560416-560982
IGKV1IGKV1-24 IGKV1-24*01 (4) JIRA1106 BK063797 [1] 468655-469225
IGKV1IGKV1-35 IGKV1-35*01 (5) JIRA1106 BK063797 [1] complement(400923-401587)
IGKV1IGKV1-47 IGKV1-47*01 (6) JIRA1106 BK063797 [1] 304041-305115
IGKV1IGKV1-50 IGKV1-50*01 (7) JIRA1106 BK063797 [1] 284416-284986
IGKV1IGKV1-54 IGKV1-54*01 (8) JIRA1106 BK063797 [1] 257019-257592
IGKV1IGKV1-57 IGKV1-57*01 (9) JIRA1106 BK063797 [1] 233543-233798 *
IGKV1IGKV1-63 IGKV1-63*01 F JIRA1106 BK063797 [1] 189829-190402
IGKV1IGKV1-87 IGKV1-87*01 (10) JIRA1106 BK063797 [1] 8059-8528
IGKV2IGKV2-3 IGKV2-3*01 F JIRA1106 BK063797 [1] 659114-659877
IGKV2IGKV2-7 IGKV2-7*01 F JIRA1106 BK063797 [1] 626865-627625
IGKV2IGKV2-8 IGKV2-8*01 F JIRA1106 BK063797 [1] 613637-614391
IGKV2IGKV2-9 IGKV2-9*01 ORF (11) JIRA1106 BK063797 [1] 606258-607013
IGKV2IGKV2-12 IGKV2-12*01 ORF (12) JIRA1106 BK063797 [1] 580442-581163
IGKV2IGKV2-16 IGKV2-16*01 (13) JIRA1106 BK063797 [1] 546386-546588 *
IGKV2IGKV2-19 IGKV2-19*01 F JIRA1106 BK063797 [1] 511067-511808
IGKV2IGKV2-22 IGKV2-22*01 F JIRA1106 BK063797 [1] 479729-480471
IGKV2IGKV2-23 IGKV2-23*01 F JIRA1106 BK063797 [1] 472518-473275
IGKV2IGKV2-25 IGKV2-25*01 F JIRA1106 BK063797 [1] 463035-463789
IGKV2IGKV2-28 IGKV2-28*01 F JIRA1106 BK063797 [1] complement(440762-441517)
IGKV2IGKV2-29 IGKV2-29*01 (14) JIRA1106 BK063797 [1] complement(432295-433042)
IGKV2IGKV2-31 IGKV2-31*01 F JIRA1106 BK063797 [1] complement(422107-422864)
IGKV2IGKV2-32 IGKV2-32*01 F JIRA1106 BK063797 [1] complement(417839-418597)
IGKV2IGKV2-36 IGKV2-36*01 F JIRA1106 BK063797 [1] complement(396832-397588)
IGKV2IGKV2-37 IGKV2-37*01 F JIRA1106 BK063797 [1] complement(383548-384276)
IGKV2IGKV2-38 IGKV2-38*01 F JIRA1106 BK063797 [1] complement(377006-377733)
IGKV2IGKV2-39 IGKV2-39*01 (15) JIRA1106 BK063797 [1] 364413-365168
IGKV2IGKV2-40 IGKV2-40*01 F JIRA1106 BK063797 [1] 355528-356279
IGKV2IGKV2-41 IGKV2-41*01 (16) JIRA1106 BK063797 [1] 350645->350844 *
IGKV2IGKV2-44 IGKV2-44*01 (17) JIRA1106 BK063797 [1] 324133-324905
IGKV2IGKV2-45 IGKV2-45*01 F JIRA1106 BK063797 [1] 319269-320022
IGKV2IGKV2-49 IGKV2-49*01 (18) JIRA1106 BK063797 [1] 288298-289056
IGKV2IGKV2-53 IGKV2-53*01 F JIRA1106 BK063797 [1] 263472-264232
IGKV2IGKV2-55 IGKV2-55*01 F JIRA1106 BK063797 [1] 246729-247490
IGKV2IGKV2-59 IGKV2-59*01 (19) JIRA1106 BK063797 [1] 221912-222648
IGKV2IGKV2-60 IGKV2-60*01 (20) JIRA1106 BK063797 [1] 215256-216015
IGKV2IGKV2-61 IGKV2-61*01 (21) JIRA1106 BK063797 [1] 210127-210877
IGKV2IGKV2-66 IGKV2-66*01 (22) JIRA1106 BK063797 [1] 171766-172069 *
IGKV2IGKV2-68 IGKV2-68*01 (23) JIRA1106 BK063797 [1] 153194-153403 *
IGKV2IGKV2-69 IGKV2-69*01 F JIRA1106 BK063797 [1] 126539-127331
IGKV2IGKV2-70 IGKV2-70*01 (24) JIRA1106 BK063797 [1] 114934-115725
IGKV2IGKV2-71 IGKV2-71*01 (25) JIRA1106 BK063797 [1] 109501-109797 *
IGKV2IGKV2-72 IGKV2-72*01 (26) JIRA1106 BK063797 [1] 101613-102379
IGKV2IGKV2-74 IGKV2-74*01 F JIRA1106 BK063797 [1] 93422-94209
IGKV2IGKV2-75 IGKV2-75*01 F JIRA1106 BK063797 [1] 81844-82630
IGKV2IGKV2-76 IGKV2-76*01 (27) JIRA1106 BK063797 [1] 73687-73984 *
IGKV2IGKV2-77 IGKV2-77*01 (28) JIRA1106 BK063797 [1] 71373-72150
IGKV2IGKV2-78 IGKV2-78*01 (29) JIRA1106 BK063797 [1] 66461-67453
IGKV2IGKV2-79 IGKV2-79*01 F JIRA1106 BK063797 [1] 63838-64635
IGKV2IGKV2-80 IGKV2-80*01 F JIRA1106 BK063797 [1] 47872-48661
IGKV2IGKV2-81 IGKV2-81*01 (30) JIRA1106 BK063797 [1] 42948-43942
IGKV2IGKV2-82 IGKV2-82*01 F JIRA1106 BK063797 [1] 40323-41126
IGKV2IGKV2-83 IGKV2-83*01 ORF (31) JIRA1106 BK063797 [1] 32014-32821
IGKV2IGKV2-84 IGKV2-84*01 (32) JIRA1106 BK063797 [1] 19074-19883
IGKV2IGKV2-85 IGKV2-85*01 F JIRA1106 BK063797 [1] 12679-13462
IGKV3IGKV3-1 IGKV3-1*01 F JIRA1106 BK063797 [1] complement(676906-677486)
IGKV3IGKV3-6 IGKV3-6*01 (33) JIRA1106 BK063797 [1] complement(631626-631911) *
IGKV3IGKV3-11 IGKV3-11*01 (34) JIRA1106 BK063797 [1] complement(588501-588785) *
IGKV3IGKV3-15 IGKV3-15*01 F JIRA1106 BK063797 [1] complement(555158-555738)
IGKV3IGKV3-17 IGKV3-17*01 F JIRA1106 BK063797 [1] complement(527272-527852)
IGKV3IGKV3-21 IGKV3-21*01 F JIRA1106 BK063797 [1] complement(485005-485585)
IGKV3IGKV3-26 IGKV3-26*01 F JIRA1106 BK063797 [1] 451017-451595
IGKV3IGKV3-34 IGKV3-34*01 F JIRA1106 BK063797 [1] 407340-407920
IGKV3IGKV3-43 IGKV3-43*01 (35) JIRA1106 BK063797 [1] complement(330225-330792)
IGKV3IGKV3-48 IGKV3-48*01 F JIRA1106 BK063797 [1] complement(299223-299804)
IGKV3IGKV3-51 IGKV3-51*01 F JIRA1106 BK063797 [1] complement(278182-278741)
IGKV3IGKV3-58 IGKV3-58*01 F JIRA1106 BK063797 [1] complement(227198-227778)
IGKV3IGKV3-67 IGKV3-67*01 F JIRA1106 BK063797 [1] 160213-160762
IGKV4IGKV4-64 IGKV4-64*01 F JIRA1106 BK063797 [1] complement(181525-182101)
IGKV7IGKV7-2 IGKV7-2*01 (36) JIRA1106 BK063797 [1] complement(671991-672627)
IGKV7IGKV7-18 IGKV7-18*01 (37) JIRA1106 BK063797 [1] complement(520272-520792)
IGKV7IGKV7-33 IGKV7-33*01 (16) JIRA1106 BK063797 [1] 409901-410544
IGKV7IGKV7-52 IGKV7-52*01 (38) JIRA1106 BK063797 [1] complement(273649-274277)
IGKV7IGKV7-65 IGKV7-65*01 F JIRA1106 BK063797 [1] complement(177812-178451)
IGKV8IGKV8-4 IGKV8-4*01 (16) JIRA1106 BK063797 [1] 648528-649128
IGKV8IGKV8-13 IGKV8-13*01 ORF (39) JIRA1106 BK063797 [1] 572044-572646
IGKV8IGKV8-20 IGKV8-20*01 (40) JIRA1106 BK063797 [1] 499805-500586
IGKV8IGKV8-42 IGKV8-42*01 (41) JIRA1106 BK063797 [1] 343583-343865 *
IGKV8IGKV8-46 IGKV8-46*01 (42) JIRA1106 BK063797 [1] 310724-311326
IGKV8IGKV8-56 IGKV8-56*01 (43) JIRA1106 BK063797 [1] 239874-240476
IGKV8IGKV8-62 IGKV8-62*01 ORF (44) JIRA1106 BK063797 [1] 202788-203389
IGKV8IGKV8-86 IGKV8-86*01 F JIRA1106 BK063797 [1] 9724-10322

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT notes:
  1. frameshift in L-PART1: insertion of 2 nt causing defectuous DONOR-SPLICE, several STOP-CODON in V-REGION
  2. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 38, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  3. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 27, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  4. frameshift in L-PART1: deletion of 2 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 38, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  5. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  6. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE
  7. frameshift in L-PART1: deletion of 2 nt causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  8. no CONSERVED-TRP: STOP-CODON instead of Trp
  9. no L-PART1, frameshift in V-REGION: deletion of 28 nt in FR3-IMGT
  10. frameshift in V-REGION: deletion of 26 nt in FR1-IMGT
  11. no 1st-CYS: Phe instead of Cys
  12. no 1st-CYS: Tyr instead of Cys
  13. no L-PART2, frameshifts in V-REGION: several insertions and deletions
  14. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  15. frameshift in V-REGION: deletion of 5 nt in FR2-IMGT
  16. frameshifts in V-REGION: several insertions and deletions
  17. frameshift in L-PART2: deletion of 1 nt
  18. frameshift in L-PART1: deletion of 2 nt causing defectuous DONOR-SPLICE, no CONSERVED-TRP: STOP-CODON instead of Trp
  19. no L-PART2, truncated pseudogene, frameshift in V-REGION: deletion of 1nt in FR1-IMGT
  20. frameshift in L-PART2: insertion of 1 nt
  21. frameshift in L-PART1 causing defectuous DONOR-SPLICE
  22. frameshift in L-PART2: deletion of 1 nt, frameshifts in V-REGION: several insertions and deletions
  23. no L-PART1, several STOP-CODON in V-REGION
  24. STOP-CODON in L-PART1
  25. frameshift in L-PART2: deletion of 1 nt, frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  26. frameshift in V-REGION: deletion of 14 nt in FR1-IMGT
  27. frameshift in V-REGION: deletion of 4 nt in FR2-IMGT, no V-NONAMER
  28. STOP-CODON in V-REGION: position 44
  29. no INIT-CODON: Arg instead of Met, frameshifts in V-REGION: several insertions and deletions
  30. no INIT-CODON: Arg instead of Met, frameshift in V-REGION: deletion of 2 nt in CDR1-IMGT
  31. noncanonical ACCEPTOR-SPLICE: nggnn instead of nagnn
  32. no 1st-CYS: STOP-CODON instead of Cys
  33. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT, no V-NONAMER
  34. no L-PART1, frameshift in V-REGION: deletion of 2 nt in CDR1-IMGT
  35. frameshift in V-REGION: deletion of 13 nt in FR3-IMGT
  36. frameshift in L-PART1: deletion of 2 nt causing defectuous DONOR-SPLICE
  37. several STOP-CODON in V-REGION
  38. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  39. noncanonical V-NONAMER: gcagaaact instead of acacaaacc
  40. no INIT-CODON: Lys instead of Met, frameshifts in V-REGION: several insertions and deletions
  41. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT, no V-NONAMER
  42. no CONSERVED-TRP: STOP-CODON instead of Trp, several STOP-CODON in V-REGION
  43. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  44. noncanonical V-NONAMER: gcaataacc instead of acacaaacc
IMGT references:
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068