Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

In the realm of IMGT allele confirmation, a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Domestic ferret (Mustela putorius furo) TRGC IMGT group:
IMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation
Chromosomosal
localization
ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers
Positions
in the sequence
Secondary
accession
numbers
IsolateClone namesAccession
numbers
Positions
in the sequence
TRGC1 TRGC1*01 (1) EX1 JIRA1106 IMGT000195 31825-32154
TRGC1 TRGC1*01 (2) EX2B JIRA1106 IMGT000195 41051-41086
TRGC1 TRGC1*01 (3) EX3 JIRA1106 IMGT000195 43125-43263
TRGC2 TRGC2*01 (4) EX1 JIRA1106 IMGT000195 <76008-76265
TRGC2 TRGC2*01 (4) EX2A JIRA1106 IMGT000195 85316-85441
TRGC2 TRGC2*01 (5) EX2B JIRA1106 IMGT000195 91712-91764
TRGC3 TRGC3*01 F EX1 JIRA1106 IMGT000195 143036-143365
TRGC3 TRGC3*01 F EX2A JIRA1106 IMGT000195 151144-151269
TRGC3 TRGC3*01 F EX2B JIRA1106 IMGT000195 155827-155874
TRGC3 TRGC3*01 F EX3 JIRA1106 IMGT000195 157881-158020
TRGC4 TRGC4*01 F EX1 JIRA1106 IMGT000195 209901-210230
TRGC4 TRGC4*01 F EX2A JIRA1106 IMGT000195 219300-219425
TRGC4 TRGC4*01 F EX2B JIRA1106 IMGT000195 223787-223834
TRGC4 TRGC4*01 F EX3 JIRA1106 IMGT000195 225836-225975
TRGC5 TRGC5*01 F EX1 JIRA1106 IMGT000195 259803-260129
TRGC5 TRGC5*01 F EX2A JIRA1106 IMGT000195 269164-269289
TRGC5 TRGC5*01 F EX2B JIRA1106 IMGT000195 276197-276244
TRGC5 TRGC5*01 F EX3 JIRA1106 IMGT000195 278036-278175
TRGC5A TRGC5A*01 (6) EX1 JIRA1106 IMGT000195 292017-292345
TRGC5A TRGC5A*01 (6) EX2A JIRA1106 IMGT000195 294352-294474
TRGC5A TRGC5A*01 (6) EX2B JIRA1106 IMGT000195 298308-298355
TRGC5A TRGC5A*01 (6) EX3 JIRA1106 IMGT000195 299403-299539
TRGC6 TRGC6*01 (7) EX1 JIRA1106 IMGT000195 <344436-344506
TRGC6 TRGC6*01 (8) EX2A JIRA1106 IMGT000195 344908-345034
TRGC6 TRGC6*01 (9) EX2B JIRA1106 IMGT000195 354853-354900
TRGC7 TRGC7*01 F EX1 JIRA1106 IMGT000195 422642-422971
TRGC7 TRGC7*01 F EX2B JIRA1106 IMGT000195 426297-426344
TRGC7 TRGC7*01 F EX3 JIRA1106 IMGT000195 428697-428836
TRGC8 TRGC8*01 F EX1 JIRA1106 IMGT000195 497807-498133
TRGC8 TRGC8*01 F EX2B JIRA1106 IMGT000195 508728-508775
TRGC8 TRGC8*01 F EX3 JIRA1106 IMGT000195 511430-511569
TRGC9 TRGC9*01 F EX1 JIRA1106 IMGT000195 539096-539425
TRGC9 TRGC9*01 F EX2B JIRA1106 IMGT000195 542245-542280
TRGC9 TRGC9*01 F EX3 JIRA1106 IMGT000195 544373-544512
IMGT notes:
  1. frameshift in EX2B: deletion of 2 nt and deletion of 1 nt, frameshift in EX3: deletion of 1 nt
  2. frameshift: deletion of 2 nt and deletion of 1 nt
  3. frameshift in EX3: deletion of 1 nt
  4. frameshift in EX2B: deletion of 5 nt+no EX3
  5. frameshift: deletion of 5 nt
  6. frameshift in EX1: deletion of 1 nt
  7. partial in 5'
  8. frameshift: deletion of 2 nt
  9. frameshift: deletion of 2 nt in EX2A, no EX3