Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

In the realm of IMGT allele confirmation, a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Domestic ferret (Mustela putorius furo) TRGJ IMGT group:
IMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation
Chromosomosal
localization
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers
Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
Secondary
accession
numbers
IsolateClone namesAccession
numbers
Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
TRGJ1-1 TRGJ1-1*01 ORF (1) JIRA1106 IMGT000195 22287-22376
TRGJ2-1 TRGJ2-1*01 (2) JIRA1106 IMGT000195 67807-67898
TRGJ2-2 TRGJ2-2*01 (3) JIRA1106 IMGT000195 69167-69241 *
TRGJ2-3 TRGJ2-3*01 F JIRA1106 IMGT000195 70396-70485
TRGJ3-1 TRGJ3-1*01 (4) JIRA1106 IMGT000195 133821-133914
TRGJ3-2 TRGJ3-2*01 (5) JIRA1106 IMGT000195 134974-135048 *
TRGJ3-3 TRGJ3-3*01 F JIRA1106 IMGT000195 136253-136342
TRGJ4-1 TRGJ4-1*01 (4) JIRA1106 IMGT000195 200762-200855
TRGJ4-2 TRGJ4-2*01 (6) JIRA1106 IMGT000195 201921-201982 *
TRGJ4-3 TRGJ4-3*01 F JIRA1106 IMGT000195 203155-203249
TRGJ5-1 TRGJ5-1*01 (7) JIRA1106 IMGT000195 250449-250541
TRGJ5-2 TRGJ5-2*01 (8) JIRA1106 IMGT000195 251608-251669 *
TRGJ5-3 TRGJ5-3*01 F JIRA1106 IMGT000195 253051-253140
TRGJ6-1 TRGJ6-1*01 ORF (9) JIRA1106 IMGT000195 337817-337905
TRGJ6-2 TRGJ6-2*01 (10) JIRA1106 IMGT000195 338979-339069
TRGJ6-3 TRGJ6-3*01 ORF (11) JIRA1106 IMGT000195 340186-340272
TRGJ7-1 TRGJ7-1*01 ORF (12) JIRA1106 IMGT000195 416926-417013
TRGJ7-2 TRGJ7-2*01 (13) JIRA1106 IMGT000195 417316-417419
TRGJ8-1 TRGJ8-1*01 ORF (14) JIRA1106 IMGT000195 492535-492620
TRGJ9-1 TRGJ9-1*01 ORF (15) JIRA1106 IMGT000195 534657-534745
TRGJ9-2 TRGJ9-2*01 (7) JIRA1106 IMGT000195 535982-536068
IMGT notes:
  1. noncanonical J-HEPTAMER: gacggtt instead of gacagtg, noncanonical J-MOTIF: LGXG instead of FGXG
  2. frameshift in J-REGION: deletion of 1 nt and deletion of 1 nt and deletion of 1 nt
  3. no J-NONAMER, frameshift in J-REGION: deletion of 1 nt and deletion of 1 nt causing defectuous DONOR-SPLICE
  4. STOP-CODON in J-REGION
  5. no J-RS, frameshift in J-REGION: insertion of 1 nt and deletion of 1 nt and deletion of 2 nt causing defectuous DONOR-SPLICE
  6. no J-NONAMER, frameshift in J-REGION: insertion of 1 nt and deletion of 1 nt and deletion of 2 nt causing defectuous DONOR-SPLICE
  7. STOP-CODON in J-REGION, frameshift in J-REGION: deletion of 1 nt causing defectuous DONOR-SPLICE
  8. no J-RS, frameshift in J-REGION: insertion of 1 nt and deletion of 1 nt and deletion of 1 nt causing defectuous DONOR-SPLICE
  9. noncanonical J-HEPTAMER: cagtgtg instead of gacagtg, noncanonical J-MOTIF: FTXE instead of FGXG
  10. frameshift in J-REGION: insertion of 1 nt causing defectuous DONOR-SPLICE
  11. noncanonical J-NONAMER: agtttttca instead of catttttgt, noncanonical J-HEPTAMER: gatacag instead of gacagtg
  12. noncanonical J-HEPTAMER: cagtgtg instead of gacagtg, noncanonical J-MOTIF: FAXG instead of FGXG
  13. no J-HEPTAMER, frameshift in J-REGION: deletion of 1 nt causing defectuous DONOR-SPLICE
  14. noncanonical J-NONAMER: actaatg instead of gacagtg, noncanonical J-MOTIF: FAXG instead of FGXG
  15. noncanonical J-NONAMER: agattgctg instead of agtttttga, noncanonical J-HEPTAMER: cggtgtg instead of cactgtg, noncanonical J-MOTIF: FAXG instead of FGXG