Table of alleles: Mouse (Mus musculus) TRDV

Print of this table: Bosc, N. and Lefranc, M.-P., Dev. Comp. Immunol., 27, 465-497 (2003). PMID:12697305

Functionality is shown between:
- parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
- brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

The IMGT allele table refers to the V-REGION polymorphism. It does not include polymorphisms in the other parts of the V-GENE. V-REGION alleles are only described for genes which have at least one Functional or ORF allele. The accession number of a reference sequence is given for each allele.
Nucleotide mutations and amino acid changes in CDR3-IMGT of rearranged sequences are not taken into account for the description of polymorphism.

Click on a gene name to get the alignment of the corresponding V-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

The alleles of the 10 TRAV/DV genes which belong to 7 TRAV subgroups are reported in the TRAV Mouse (Mus musculus) Table of alleles .

TRDV
subgroup		 TRDV
gene name		 Fct TRDV
allele name		 Strain Accession number Confirmed
by genetics
and/or data		 Description of mutations
TRDV1 TRDV1 F TRDV1*01 BALB/c M94080 +  
TRDV2 TRDV2-1 F TRDV2-1*01 129/SvJ AC003993    
TRDV2-2 F TRDV2-2*01 129/SvJ AC003993 + a51  |a54  |
[F] TRDV2-2*02 B10.A U28810   a51>g|a54>g|
TRDV4 TRDV4 F TRDV4*01 129/SvJ AC003057 +  
TRDV5 TRDV5 F TRDV5*01 BALB/c M23382   t56  ,V19  |c66  |c318  |
F TRDV5*02 B10.D2-H2dm1 M23095 +                  |c318>g|
F TRDV5*03 B10.D2-H2dm1 M64239 +            |c66>t|c318>g|
(F) TRDV5*04 BALB/c x 129 (F1) M37281   t56>c,V19>A|c66>t|

Created: 15/02/2000
Last updated: Wednesday, 12-Jun-2024 16:02:42 CEST
Author: Nathalie Bosc