Atlantic salmon (Salmo salar) IGH locus on chromosome 6 (locus A - Salsal ssa06)

The orientation of the Atlantic salmon (Salmo salar) IGH locus on the chromosome 6 (locus A - Salsal ssa06) is reverse (REV).

Legend:
Colors are according to IMGT color menu for genes.
The boxes representing the genes are not to scale. Exons are not shown.
A double slash // indicates a gap in genome assembly. Distances in bp (base pair) or in kb (kilobase) associated with a double slash are taken into account in the length of the lines and included in the numbers displayed at the right end of the lines.
A dotted line ... indicates the distance in kb (kilobase) between the locus and its bornes (5' borne and the most 5' gene in the locus and/or 3' borne and the most 3' gene in the locus) on the top and bottom lines, respectively. These distances are not represented at scale and/or are not included in IMGT-LOCUS-UNIT and may not be included in the numbers displayed at the right ends of these two lines .

IGH gene names are according to IMGT nomenclature [2].
Single arrows show genes whose polarity is opposite to that of the D-J-C-CLUSTER comprising IGHD (D1 to D9)-IGHJ (J1 to J5)-IGHM-IGHD.

Gene names of IGHV pseudogenes with frameshift(s) in the V-REGION are not displayed lack of space in the locus map at the IMGT standardized scale (line = 200 kb). For all gene names, see Zoom x2.

Zoom for IGH V-D-J-C-CLUSTER

Atlantic salmon (Salmo salar) IGH locus on chromosome 3 (locus B - Salsal ssa03)

The orientation of the Atlantic salmon (Salmo salar) IGH locus on the chromosome 3 (locus B - Salsal ssa03) is forward (FWD).

Legend:
Colors are according to IMGT color menu for genes.
The boxes representing the genes are not to scale. Exons are not shown.
A double slash // indicates a gap in genome assembly. Distances in bp (base pair) or in kb (kilobase) associated with a double slash are taken into account in the length of the lines and included in the numbers displayed at the right end of the lines.
A dotted line ... indicates the distance in kb (kilobase) between the locus and its bornes (5' borne and the most 5' gene in the locus and/or 3' borne and the most 3' gene in the locus) on the top and bottom lines, respectively. These distances are not represented at scale and/or are not included in IMGT-LOCUS-UNIT and may not be included in the numbers displayed at the right ends of these two lines .

IGH gene names are according to IMGT nomenclature [2].
Single arrows show genes whose polarity is opposite to that of the D-J-C-CLUSTER comprising IGHD (D1D to D6D)-IGHJ (J1D to J5D)-IGHMD-IGHDD.

Gene names of IGHV pseudogenes with frameshift(s) in the V-REGION are not displayed lack of space in the locus map at the IMGT standardized scale (line = 200 kb). For all gene names, see Zoom x2.

Zoom for IGH V-D-J-C-CLUSTER

More information:

• Gene table: Atlantic salmon (Salmo salar) IGHV
• Gene table: Atlantic salmon (Salmo salar) IGHD
• Gene table: Atlantic salmon (Salmo salar) IGHJ
• Gene table: Atlantic salmon (Salmo salar) IGHC
• Potential germline repertoire: Atlantic salmon (Salmo salar) IGHV, IGHD and IGHJ genes on chromosome 3 and 6

See also:

• Genomic orientation (IMGT Index)
• Taxonomy: Euteleostei