IMGT Repertoire (IG and TR)
Locus gene order: house mouse (Mus musculus) IGL locus
Relative position (order) of a gene, in a locus from the 5' end of a locus to its 3' end. The number '0' indicates that the relative position is unknown.
House mouse (Mus musculus) IGL locus
| IMGT gene name | Functionality | IMGT gene order IMGT locus ID : not relevant, individual sequence level Genome assembly: not relevant, individual sequence level Strain: BALB/c |
IMGT gene order IMGT locus ID : Musmus_IGL_1 Genome assembly: GRCm39 Strain: C57BL/6J |
IMGT gene order IMGT locus ID : Musmus_IGL_2 Genome assembly: BALB_cJ_v3 Strain: BALB/cJ |
IMGT gene order IMGT locus ID : Musmus_IGL_3 Genome assembly: DBA_2J_v3 Strain: DBA/2J |
IMGT gene order IMGT locus ID : Musmus_IGL_4 Genome assembly: NOD_SCID Strain: NOD/SCID |
IMGT gene orientation in locus | Copy Number Variation (CNV) | Haplotypes |
|---|---|---|---|---|---|---|---|---|---|
| IGLV2 | F | 1 | 1 | 1 | 1 | 1 | direct | ||
| IGLV3 | F | 2 | 2 | 2 | 2 | 2 | direct | ||
| IGLJ2 | F | 3 | 3 | 3 | 3 | 3 | direct | ||
| IGLJ2P | ORF | 3.1 | 3.1 | 3.1 | 3.1 | direct | |||
| IGLC2 | F | 4 | 4 | 4 | 4 | 4 | direct | ||
| IGLJ4 | ORF | 5 | 5 | 5 | 5 | 5 | direct | ||
| IGLC4 | P F | 6 | 6 | 6 | 6 | 6 | direct | ||
| IGLV1 | F | 7 | 7 | 7 | 7 | 7 | direct | ||
| IGLJ3 | F | 8 | 8 | 8 | 8 | 8 | direct | ||
| IGLJ3P | P | 9 | 9 | 9 | 9 | 9 | direct | ||
| IGLC3 | F | 10 | 10 | 10 | 10 | 10 | direct | ||
| IGLJ1 | F | 11 | 11 | 11 | 11 | 11 | direct | ||
| IGLC1 | F P | 12 | 12 | 12 | 12 | 12 | direct |
- Created:
- 08/02/2016
- Last updated:
- 21/11/2024
- Authors:
- Géraldine Folch, Yascim Kamel, Ifigeneia Sideri
