IMGT Repertoire (IG and TR)

Gene table: common carp (Cyprinus carpio) IGIC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIC1S1 IGIC1S1*01 (F) Cpb1 AB015902 [1] c Cpa1 AB015897 [1] (2) c
IGIC1S2 IGIC1S2*01 (F) Cpb2 AB015903 [1] c
IGIC1S3 IGIC1S3*01 (F) Cpb4 AB015905 [1] c
IGIC1S4 IGIC1S4*01 (F) Cpb3 AB015904 [1] c Cpa2 AB015898 [1] (2) c
IGIC1S5 IGIC1S5*01 (F) Cpe3 AB073330 [2] (2) c Cpe2 AB073329 [2] (2) c
Cpa3 AB015899 [1] (2) c
Cpa4 AB015900 [1] (2) c
Cpa5 AB015901 [1] (2) c
IGIC1S6 IGIC1S6*01 (F) Cpe1 AB073328 [2] (2) c
IGIC1S7 IGIC1S7*01 (F) Cpc1 AB035728 [2] c Cpf4 AB073334 [2] (2) c
IGIC1S8 IGIC1S8*01 (F) Cpf1 AB073331 [2] (2) c Cpf2 AB073332 [2] (2) c
Cpf3 AB073333 [2] (2) c
IGIC1S9 IGIC1S9*01 (F) Cpc2 AB035729 [2] c
IGIC2S1 IGIC2S1*01 (F) Cpj3 AB091120 [3] c
IGIC2S2 IGIC2S2*01 (F) Cpj1 AB091118 [3] c Cpi8 AB103560 [3] (2) c
Cpi9 AB103561 [3] (2) c
IGIC2S3 IGIC2S3*01 (F) Cpj2 AB091119 [3] c
IGIC2S4 IGIC2S4*01 (F) Cpj4 AB103558 [3] c Cpi4 AB091115 [3] (2) c
Cpi11 AB103563 [3] (2) c
IGIC2S5 IGIC2S5*01 (F) Cph1 AB091110 [3] (2) c Cpi1 AB091112 [3] (2) c
Cpi2 AB091113 [3] (2) c
IGIC2S6 IGIC2S6*01 (F) Cph2 AB091111 [3] (2) c Cpi6 AB091117 [3] (2) c
IGIC3S1 IGIC3S1*01 (F) Cpd1 AB035730 [2] c Cpg3 AB073337 [2] (2) c
Cpg7 AB073341 [2] (2) c
IGIC3S2 IGIC3S2*01 (F) Cpg2 AB073336 [2] (2) c
IGIC3S3 IGIC3S3*01 (F) Cpg1 AB073335 [2] (2) c Cpg5 AB073339 [2] (2) c
IGIC3S4 IGIC3S4*01 (F) Cpg6 AB073340 [2] (2) c
IGIC3S5 IGIC3S5*01 (F) Cpg4 AB073338 [2] (2) c
IGIC3S6 IGIC3S6*01 (P) (3) Cpg8 AB073342 [2] (2) c
IGIC3S7 IGIC3S7*01 (P) (4) Cpd2 AB035731 [2] c

c: cDNA sequence.

IMGT notes:
  1. (1) Common carp (Cyprinus carpio) constant genes are designated by the locus three letter root, followed by the letter C, the subgroup number, the letter S and a number. Present data do not permit to determine if the sequence comes from different genes, or from different alleles of the same gene.
  2. (2) Partial C-REGION in 3'.
  3. (3) Pseudogene because INSERTION of one nucleotide in E strand (between positions 279/280 in IMGT unique numbering).
  4. (4) Pseudogene because DELETION of 39 amino acids (AA 3 to 45 in IMGT unique numbering).
IMGT references:
  1. [1] Tomana M. et al., Fish Shellfish Immunol., 9, 71-80 (1999).
  2. [2] Tomana M. et al., Immunogenetics, 54, 120-129 (2002). PMID:12037604
  3. [3] Ishikawa J. et al., Unpublished (2003).
Last updated:
Sylvaine Artero, Nathalie Bosc