IMGT Repertoire (IG and TR)


Gene table: mouse (Mus musculus, Mus sp.) IGHJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal localization R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHJ1 IGHJ1*01 F 12 (58.0 cM) + BALB/c J1 V00762 [2] V00759 [1]
BALB/c J00440 [9] (1)
X53774 [6]
X63166 [8]
AKR X63165 [8]
C58 X63168 [8]
CBA X63169 [8]
CE X63170 [8]
DBA/2 X63171 [8]
NZB X63172 [8]
RF X63173 [8]
RIII X63174 [8]
129/Sv JH1 AJ851868 [10] 1207553-1207605
IGHJ1*02 F 12 (58.0 cM) J1 V00770 [3]
IGHJ1*03 F 12 (58.0 cM) A/J J1 X63164 [8] C57BL/10 X63167 [8]
SJL X63175 [8]
C57BL/6J AC073553 [13]
IMGT000065 MAP 2590080-2590171
IGHJ2 IGHJ2*01 F 12 (58.0 cM) + J2 V00770 [3] V00759 [1]
BALB/c V00762 [2]
J00440 [9] (1)
X53774 [6]
X63166 [8]
A/J X63164 [8]
AKR X63165 [8]
C57BL/10 X63167 [8]
C58 X63168 [8]
CBA X63169 [8]
CE X63170 [8]
DBA/2 X63171 [8]
NZB X63172 [8]
RF X63173 [8]
RIII X63174 [8]
SJL X63175 [8]
129/Sv JH2 AJ851868 [10] 1207871-1207918
C57BL/6J AC073553 [13]
IMGT000065 MAP 2590398-2590484
IGHJ2*02 F JH2 S73821 [11] (2)
IGHJ2*03 F + JH2 S77041 [12] (3)
IGHJ3 IGHJ3*01 F 12 (58.0 cM) + J3 V00770 [3] BALB/c V00762 [2]
J00440 [9] (1)
M28190 [5]
X53774 [6]
X63166 [8]
M17064 [4]
M17065 [4]
M17066 [4]
A/J X63164 [8]
AKR X63165 [8]
C57BL/10 X63167 [8]
C58 X63168 [8]
CBA X63169 [8]
CE X63170 [8]
DBA/2 X63171 [8]
NZB X63172 [8]
RF X63173 [8]
RIII X63174 [8]
SJL X63175 [8]
S73819 [11] (6)
S77027 [12] (6)
S77041 [12] (6)
129/Sv JH3 AJ851868 [10] 1208254-1208301
C57BL/6J AC073553 [13]
IMGT000065 MAP 2590781-2590867
IGHJ3*02 P (4) JH3 S73821 [11] (5)
IGHJ4 IGHJ4*01 F 12 (58.0 cM) J4 V00770 [3] V00769 [3]
BALB/c J00440 [9] (1)
X53774 [6]
X63166 [8]
C57BL/6 M64567 [7]
A/J X63164 [8]
AKR X63165 [8]
C57BL/10 X63167 [8]
C58 X63168 [8]
CBA X63169 [8]
CE X63170 [8]
DBA/2 X63171 [8]
NZB X63172 [8]
RF X63173 [8]
RIII X63174 [8]
SJL X63175 [8]
S77027 [12] (6)
129/Sv JH4 AJ851868 [10] 1208820-1208873
C57BL/6J AC073553 [13]
IMGT000065 MAP 2591347-2591438
IMGT notes:
  1. (1) This sequence has been artificially constructed by junction of the sequences from 19 overlapping clones.
  2. (2) The one nucleotide difference most probably derive from hypersomatic mutation [11], as this IGHJ2 germline segment is downstream of a IGH V-D-J1 rearrangement. This accession number is therefore not included in Table of alleles and Alignments of alleles.
  3. (3) Partial J-REGION: two nucleotides missing in 5'.
  4. (4) Pseudogene due to a STOP-CODON.
  5. (5) The two nucleotide differences most probably derive from hypersomatic mutations [11], as this IGHJ3 germline segment is downstream of a IGH V-D-J1 rearrangement. This accession number is therefore not included in Table of alleles and Alignments of alleles.
  6. (6) Mus sp. species sequence.
IMGT references:
  1. [1] Early P. et al., Cell, 19, 981-992 (1980). PMID:6769593
  2. [2] Newell N. et al., Science, 209, 1128-1132 (1980). PMID:6250219
  3. [3] Sakano H. et al., Nature, 286, 676-683 (1980). PMID:6774258
  4. [4] Gilmore G.L. et al., J. Immunol., 139, 619-624 (1987). PMID:3110275
  5. [5] Komori T. et al., J. Immunol., 143, 1040-1045 (1989). PMID:2501385
  6. [6] Lebecque S.G. et al., J. Exp. Med., 172, 1717-1727 (1990). PMID:2258702
  7. [7] Owens J.D. Jr et al., Mol. Cell. Biol., 11, 5660-5670 (1991). PMID:1922069
  8. [8] Solin M.L. et al., Immunogenetics, 36, 306-313 (1992). PMID:1644448
  9. [9] Gilliam A.C. et al., Proc. Natl. Acad. Sci. U.S.A., 81, 4164-4168 (1984). PMID:6429663
  10. [10] Retter, I. et al., Unpublished.
  11. [11] Weber J.S. et al., J. Immunol., 153, 3594-3602 (1994). PMID:7930582
  12. [12] Portanova J.P. et al., Mol. Immunol., 32, 117-135 (1995). PMID:7870064
  13. [13] Smith D.R., Unpublished.
Created:
13/07/1999
Last updated:
22/09/2023
Authors:
Christèle Martinez, Anna Tran