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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Truncated pseudogenes not assigned to subgroups with functional genes

IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal localization R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence (V-REGION) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (V-REGION)
(I) IGHV(I)-1 IGHV(I)-1*01 P (1) 12 (58.0 cM) C57BL/6 PG.19 BN000872 [1] 657956-658151 C57BL/6J IMGT000065 MAP 606970-607256
IGHV(I)-2 IGHV(I)-2*01 P (3) 12 (58.0 cM) C57BL/6J IMGT000065 MAP 311019-311307
(II) IGHV(II)-1 IGHV(II)-1*01 P (1) 12 (58.0 cM) 129/Sv musIGHV194 AJ851868 [3] 974536-974825 C57BL/6 Q52.4pg MAP BN000872 [1] 2423490-2423778
C57BL/6J IMGT000065 MAP 2372187-2372476
IGHV(II)-2 IGHV(II)-2*01 P (1) 12 (58.0 cM) 129/Sv musIGHV200 AJ851868 [3] 919355-919644 C57BL/6 Q52.6pg MAP BN000872 [1] 2388492-2388792
C57BL/6J IMGT000065 MAP 2337199-2337488
IGHV(II)-3 IGHV(II)-3*01 P (2) 12 (58.0 cM) 129/Sv musIGHV431 AJ851868 [3] 793117-793407
IGHV(II)-4 IGHV(II)-4*01 P (1) 12 (58.0 cM) 129/Sv musIGHV200 AJ851868 [3] 718553-718842
IGHV(II)-5 IGHV(II)-5*01 P (1) 12 (58.0 cM) 129/Sv musIGHV415 AJ851868 [3] 570968-571255
(III) IGHV(III)-1 IGHV(III)-1*01 P (1) 12 (58.0 cM) C57BL/6 AC160985 [2] C57BL/6 7183.13pg MAP BN000872 [1] 2346101-2346101
C57BL/6J IMGT000065 MAP 2294912-2295196
IGHV(III)-1*02 P (1) 12 (58.0 cM) 129/Sv musIGHV432 AJ851868 [3] 873892-874176
IGHV(III)-2 IGHV(III)-2*01 P (1) 12 (58.0 cM) 129/Sv musIGHV419 AJ851868 [3] 654820-655107
IGHV(III)-3 IGHV(III)-3*01 P (2) 12 (58.0 cM) 129/Sv musIGHV412 AJ851868 [3] 522906-523194
IGHV(III)-4 IGHV(III)-4*01 P (2) 12 (58.0 cM) 129/Sv musIGHV410 AJ851868 [3] 487053-487352 C57BL/6J IMGT000065 MAP 2216640-2216940
IGHV(III)-5 IGHV(III)-5*01 P (1) 12 (58.0 cM) 129/Sv musIGHV423 AJ851868 [3] 310762-311049
IGHV(III)-5*02 P (1) 12 (58.0 cM) C57BL/6 PG.8 BN000872 [1] 2102315-2102619 C57BL/6J IMGT000065 MAP 2051112-2051400
IGHV(III)-6 IGHV(III)-6*01 P (2) 12 (58.0 cM) 129/Sv musIGHV409 AJ851868 [3] 248755-249042
IGHV(III)-6*02 P (1) 12 (58.0 cM) C57BL/6 PG.9 BN000872 [1] 2032867-2033174 C57BL/6J IMGT000065 MAP 1981707-1981995
IGHV(III)-7 IGHV(III)-7*01 P (2) 12 (58.0 cM) 129/Sv musIGHV408 AJ851868 [3] 224597-224868
IGHV(III)-7*02 P (4) 12 (58.0 cM) C57BL/6J IMGT000065 MAP 1957887-1958114
IGHV(III)-8 IGHV(III)-8*01 P (1) 12 (58.0 cM) C57BL/6 AC160985 [2] C57BL/6 PG.3 MAP BN000872 [1] 2351937-2352251
C57BL/6J IMGT000065 MAP 2300908-2301634
IGHV(III)-9 IGHV(III)-9*01 P (1) 12 (58.0 cM) C57BL/6 AC160985 [2] C57BL/6 PG.4 MAP BN000872 [1] 2302969-2303285
C57BL/6J IMGT000065 MAP 2251912-2252214
IGHV(III)-10 IGHV(III)-10*01 P (1) 12 (58.0 cM) C57BL/6 AC160985 [2] C57BL/6 7183.17pg MAP BN000872 [1] 2289472-2289766
C57BL/6J IMGT000065 MAP 2238287-2238570
IGHV(III)-11 IGHV(III)-11*01 P (1) 12 (58.0 cM) C57BL/6 AC160985 [2] C57BL/6 PG.6 MAP BN000872 [1] 2276791-2277088
C57BL/6J IMGT000065 MAP 2225594-2225898
IGHV(III)-12 IGHV(III)-12*01 P (1) 12 (58.0 cM) C57BL/6 PG.5 BN000872 [1] 2298802-2299106 C57BL/6J IMGT000065 MAP 2247606-2247908
IGHV(III)-13 IGHV(III)-13*01 P (5) 12 (58.0 cM) C57BL/6J IMGT000065 MAP 1734968-1735256
IGHV(III)-14 IGHV(III)-14*01 P (6) 12 (58.0 cM) C57BL/6J IMGT000065 MAP 2248230-2248521

MAP: mapped sequences.

IMGT notes:
  1. (1) Pseudogene because of frameshifts in V-REGION.
  2. (2) Pseudogene because of in frame STOP-CODON in V-REGION.
  3. (3) Pseudogene because of frameshifts in V-REGION, no V-NONAMER.
  4. (4) Pseudogene because of no DONOR-SPLICE, frameshifts in V-REGION, no V-RS.
  5. (5) Pseudogene because of no INIT-CODON, frameshift in L-PART2, frameshifts in V-REGION.
  6. (6) Pseudogene because of no L-PART1, no L-PART2, frameshifts in V-REGION, no V-RS.
IMGT references:
  1. [1] Johnston C.M. et al., J Immunol., 176, 4221-4234 (2006). PMID:16547259
  2. [2] Zheng X.et al., Unpublished.
  3. [3] Retter I. et al., Unpublished.
Created:
02/03/2006
Last updated:
22/09/2023
Authors:
Géraldine Folch