IMGT Repertoire (IG and TR)
Gene table: house mouse (Mus musculus) IGKC
Citing this page:
Martinez-Jean, C. et al., Exp. Clin. Immunogenet., 18, 255-279 (2001)
PMID: 11872956
- Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
- T: Transcribed
- Pr: Translated into protein
"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.
Functionality is shown between parentheses, (F) and (P), when the accession
number refers to rearranged genomic DNA or cDNA and the corresponding germline
gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number
refers to genomic DNA, but not known as being germline or rearranged.
Click on:
- IMGT gene name to get the corresponding IMGT/GENE-DB entry,
- IMGT allele name to see the corresponding Alignments of alleles,
- accession number to get the corresponding IMGT/LIGM-DB entry.
| IMGT gene name | IMGT allele name | Fct | Chromosomal localization | T | Pr | Positions in the locus | IMGT/LIGM-DB reference sequences | IMGT/LIGM-DB sequences from the literature | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Strain | Clone names | Exons | Accession numbers | Positions in the sequence | Secondary accession numbers | Strain | Clone names | Accession numbers | Positions in the sequence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IGKC | IGKC*01 | F | 6 (30.0 cM) | C57BL/6J | IMGT000068 | MAP | 3180800..3181122 | V00777 | [3] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BALB/c | V01569 | [5] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| A/J | X67003 | [6] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| CE | X67004 | [6] | (3) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| CBA | X67005 | [6] | (3) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| RIII | X67006 | [6] | (4) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| C57BL/10 | X67007 | [6] | (5) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NZB | X67010 | [6] | (8) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| DBA/2 | X67012 | [6] | (3) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| V00806 | [1] | (1) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| V00807 | [2] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| DBA_2J | IMGT000125 | [7] | MAP | 3183542-3183864 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BALB/cJ | IMGT000123 | [7] | MAP | 3186386-3186705 | (11) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IGKC*02 | F | 6 (30.0 cM) | AKR | X67002 | [6] | (2) | C58 | X67008 | [6] | (6) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PL | X67009 | [6] | (7) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IGKC*03 | F | 6 (30.0 cM) | SJL | X67011 | [6] | (9) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IMGT notes:
- (1) Partial C-REGION.
- (2) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. a78, t153, g229, c305 are missing in EMBL flat file (Position numbering according to the present EMBL sequence).
- (3) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. a75, t150, g226, c302, g378 are missing in EMBL flat file (Position numbering according to the present EMBL sequence).
- (4) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. a74, a150, a226, t302, a378 are missing in EMBL flat file (Position numbering according to the present EMBL sequence).
- (5) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. g75, c152, a227, t303 are missing in EMBL flat file (Position numbering according to the present EMBL sequence).
- (6) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. a75, a152, a227, c303 are missing in EMBL flat file and nucleotides 170 to 172 are unresolved (Position numbering according to the present EMBL sequence).
- (7) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. t74, g150, c226, a302 are missing in EMBL flat file (Position numbering according to the present EMBL sequence).
- (8) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. a74, a149, a226, t302, a378 are missing in EMBL flat file (Position numbering according to the present EMBL sequence).
- (9) The sequence described in the manuscript is different from the one submitted to the EMBL data library. We refer to the sequence published in the original manuscript. a75, t150, g226, c302 are missing in EMBL flat file (Position numbering according to the present EMBL sequence).
- (10) Position of L-V-GENE-UNIT
- (11) Position of V-REGION
IMGT references:
- [1] Seidman J.G. et al., Nature, 280, 370-375 (1979). PMID:111146
- [2] Hieter P.A. et al., Cell, 22, 197-207 (1980). PMID:6775818
- [3] Max E.E. et al., J. Biol. Chem., 256, 5116-5120 (1981). PMID:6262318
- [4] Jouvin-Marche E. et al., Mol. Biol. Evol., 5, 500-511 (1988). PMID:3143045
- [5] van der Loo W. et al., Genetics, 132, 1105-1117 (1992). PMID:1459431
- [6] Solin M.L. and Kaartinen M., Immunogenetics, 37, 401-407 (1993). PMID:8436414
- [7] Keane,T. et al., Unpublished..
More information:
See also (IMGT Scientific chart):
- Created:
- 18/10/2001
- Last updated:
- 22/09/2023
- Authors:
- Ariadni Papadaki, Géraldine Folch
