Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes
Citing this page:Martinez-Jean, C. et al., Exp. Clin. Immunogenet., 18, 255-279 (2001) PMID: 11872956 pdf

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal localization R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGKJ1 IGKJ1*01 F 6 (30.0 cM) + + C57BL/6J MAP IMGT000068 3176888..3176964 A/J M15521 [5]
V00805 [6] (3)
C58 M27036 [4]
SJL M27037 [4]
SK M27038 [4]
X68864 [1] (4)
X68866 [1]
X68867 [1]
DBA_2J IMGT000125 [7] MAP 3179630-3179706
BALB/cJ IMGT000123 [7] MAP 3182513-3182550 (7)
IGKJ1*02 F 6 (30.0 cM) + + C58 J1 MAP M15559 [2] (2)
IGKJ2 IGKJ2*01 F 6 (30.0 cM) + + C57BL/6J MAP IMGT000068 3177242..3177319 SJL M27037 [4]
SK M27038 [4]
X68859 [1] (4)
J2 V00777 [3] MAP
DBA_2J IMGT000125 [7] MAP 3179984-3180061
BALB/cJ IMGT000123 [7] MAP 3182867-3182905 (7)
IGKJ2*02 F 6 (30.0 cM) C58 J2 MAP M15559 [3]
IGKJ2*03 F 6 (30.0 cM) + + C58 J2 MAP M27036 [4]
IGKJ3 IGKJ3*01 ORF (1) 6 (30.0 cM) + + C57BL/6J MAP IMGT000068 (5) 3177551..3177625 C58 M15559 [2]
M27036 [4]
SK M27038 [4]
J3 V00777 [3] MAP
DBA_2J IMGT000125 [7] MAP 3180293-3180367
BALB/cJ IMGT000123 [7] MAP 3183174-3183211 (7)
IGKJ3*02 ORF (1) 6 (30.0 cM) SJL J3 MAP M27037 [4]
IGKJ4 IGKJ4*01 F 6 (30.0 cM) + + C57BL/6J MAP IMGT000068 3177873..3177950 SJL M27037 [4]
SK M27038 [4]
X68854 [1]
X68861 [1] (4)
J4 V00777 [3] MAP
DBA_2J IMGT000125 [7] MAP 3180615-3180692
BALB/cJ IMGT000123 [7] MAP 3183499-3183536 (7)
IGKJ4*02 F 6 (30.0 cM) + + C58 J4 MAP M15559 [2] C58 M27036 [4]
IGKJ5 IGKJ5*01 F 6 (30.0 cM) + + C57BL/6J MAP IMGT000068 3178212..3178288 C58 M15559 [2]
M27036 [4]
SJL M27037 [4]
SK M27038 [4]
J5 V00777 [3] MAP
DBA_2J IMGT000125 [7] MAP 3180954-3181030
BALB/cJ IMGT000123 [7] MAP 3183837-3183874 (7)

MAP: mapped sequences.

IMGT notes:
  1. (1) Noncanonical DONOR-SPLICE: nct instead of ngt.
  2. (2) Partial J-REGION: one nucleotide missing in 5'.
  3. (3) Partial J-GENE: no J-NONAMER.
  4. (4) Partial J-REGION: 3 amino acids missing in 3'.
  5. (5) Noncanonical J-HEPTAMER, noncanonical J-MOTIF, noncanonical DONOR-SPLICE.
  6. (6) Position of L-V-GENE-UNIT
  7. (7) Position of V-REGION
IMGT references:
  1. [1] Blackwell T.K. et al., EMBO J., 8, 735-742 (1989). PMID:2785917
  2. [2] Boyd R.T. et al., Immunogenetics, 24, 150-157 (1986). PMID:2875941
  3. [3] Max E.E. et al., J. Biol. Chem., 256, 5116-5120 (1981). PMID:6262318
  4. [4] Ponath P.D. et al., Immunogenetics, 29, 389-396 (1989). PMID:2567282
  5. [5] Sanz I. et al., Proc. Natl. Acad. Sci. USA, 84, 1085-1089 (1987). PMID:3103124
  6. [6] Seidman J.G. et al., Nature, 280, 370-375 (1979). PMID:111146
  7. [7] Keane,T. et al., Unpublished..
Created:
16/04/1998
Last updated:
22/09/2023
Authors:
Ariadni Papadaki, Christèle Martinez Jean