IMGT Repertoire (IG and TR)

Gene table: house mouse (Mus musculus) TRDC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name IMGT allele name Fct Chromosomal localization T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
TRDC TRDC*01 F 14 (19.7 cM) BALB/c Ex1 EX1 M23381 [1] Std:ddY X17180 [2] (1)
B10.D2-H2dm1 (3) M64239 [3]
C57BL/6J IMGT000082 [4] 1724884..1725162
129/SvJ AE007512 [5] 1580287-1581769
Ex2 EX2 L36133 [1] B10.D2-H2dm1 (3) M64239 [3]
C57BL/6J IMGT000082 [4] 1725804..1725869
129/SvJ AE007512 [5] 1581227-1581292
Ex3 EX3 L36134 [1] B10.D2-H2dm1 (3) M64239 [3]
C57BL/6J IMGT000082 [4] 1726236..1726352
129/SvJ AE007512 [5] 1581653-1581769
Ex4 EX4UTR (2) L36135 [1] B10.D2-H2dm1 (3) M64239 [3]
C57BL/6J IMGT000082 [4] 1727499..1728141
129/SvJ AE007512 [5] 1592342-1592441
IMGT notes:
  1. (1) EX1 is partial in 3'.
  2. (2) Since EX4 is untranslated, nucleotide differences observed in EX4 are not taken into account for the description of alleles.
  3. (3) B10.D2-H2dm1 is a congenic strain, B10 is the abbreviated symbol of C57BL/10 and D2 the abbreviated symbol of DBA/2J.
IMGT references:
  1. [1] Iwashima M. et al., Proc. Natl. Acad. Sci. USA., 85, 8161-8165 (1988). PMID:3263646
  2. [2] Toda M. et al., J. Mol. Biol., 202, 219-231 (1988). PMID:3172216
  3. [3] Wilson R.K. et al., Genomics, 13, 1198-1208 (1992). PMID:1505953
  4. [4] Deanna C. et al, PLoS Biol., (9)7 (2011). PMID:21750661
  5. [5] Lee I.Y. et al., Unpublished (1998).
Last updated:
Nathalie Bosc and Guilhem Zeitoun