IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Click on the strain name to get information on the strain (link to MGD).

The accession number AF037352 encompasses 105726 bp and includes the 5' part of the locus from TRGV7 to dowstream from TRGC3. AF021335 encompasses 62031 bp and includes the 3' part of the locus from TRGC2 to TRGC4. The mouse strain is not specified in these two accession numbers.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		T	Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers			Strain		Clone names	Accession numbers	Positions in the sequence
	TRGC1	TRGC1*01	F		13 (10.0 cM)					BALB/c	Cgamma1	EX1	M13340	[2]						Cgamma1	AF037352	[4]
												EX2	M13341	[2]						Cgamma1	AF037352	[4]
												EX3	M13342	[2]						Cgamma1	AF037352	[4]
												EX3	M13342	[2]					C57BL/6J		IMGT000133	[6]	MAP	46062-48574	(4)
	TRGC2	TRGC2*01	F		13 (10.0 cM)					BALB/c	C10.5	EX1	M12834	[1]						Cgamma2	AF021335	[5]
												EX2	M12835	[1]						Cgamma2	AF021335	[5]
												EX3	M12836	[1]						Cgamma2	AF021335	[5]
												EX3	M12836	[1]					C57BL/6J		IMGT000133	[6]	MAP	complement(137022--139510)	(4)
	TRGC3	TRGC3*01	ORF	(1)	13 (10.0 cM)					BALB/c	C7.5	EX1	M12837	[1]
												EX2	M12838	[1]
												EX3	M12839	[1]
		TRGC3*02	P	(2)	13 (10.0 cM)					BALB/c	Cgamma3	EX1	AF037352	[4]
												EX2	AF037352	[4]
												EX3	AF037352	[4]
		TRGC3*03	ORF	(1)	13 (10.0 cM)				92841-95356	C57BL/6J			IMGT000133	[6]	MAP	92841-95356	(4)
	TRGC4	TRGC4*01	F	(2)	13 (10.0 cM)					BALB/c	Cgamma4	EX1	AF021335	[5]						Cgamma4	L02339	[3]
												EX2a	L02340	[3]						Cgamma4	AF021335	[5]
												EX2b	L02341	[3]						Cgamma4	AF021335	[5]
												EX3	AF021335	[5]					C57BL/6J		IMGT000133	[6]	MAP	176517-184299	(4)

IMGT notes:

(1) Defective DONOR-SPLICE in EX2.
(2) The INSERTION of 1 nucleotide (c) between codons 83/84 and the INSERTION of 1 nucleotide (c) between codons 91/92 lead to frameshifts in EX1.

IMGT references:

[1] Hayday A.C. et al., Cell, 40, 259-269 (1985). PMID:3917858
[2] Garman R.D. et al., Cell, 45, 733-742 (1986). PMID:3486721
[3] Vernooij B.T. et al., Genomics, 17, 566-574 (1993). PMID:8244371
[4] Zhou Q. et al., Unpublished.
[5] Parlee M.J. et al., Unpublished.
[6] Church,D.M. et al., PLoS Biol. 7 (5), e1000112 (2009). PMID:19468303

See also (IMGT Scientific chart):

Created:: 26/02/2001
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: house mouse (Mus musculus) TRGC