IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name		Fct	Chromosomal localization	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name		Fct	Chromosomal localization	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers		Strain	Clone names	Accession numbers	Positions in the sequence
	TRGJ1		TRGJ1*01	F	13 (10.0 cM)	+	+			BALB/c	J13.4		M12830	[1]				Jgamma1	AF037352	[4]
	TRGJ1		TRGJ1*01	F	13 (10.0 cM)	+	+			BALB/c	J13.4		M12830	[1]			C57BL/6J		IMGT000133	[6]		MAP	42302-42361	(3)
	TRGJ2	(1)	TRGJ2*01	F	13 (10.0 cM)	+	+			BALB/c	J10.5		M12829	[1]					M26768	[2]	(2)
																		Jgamma2	AF021335	[5]
																	C57BL/6J		IMGT000133	[6]		MAP	complement(143204--143263)	(3)
	TRGJ3		TRGJ3*01	F	13 (10.0 cM)	+	+						AF037352	[4]			C57BL/6J		IMGT000133	[6]		MAP	89076-89135	(3)
	TRGJ4		TRGJ4*01	F	13 (10.0 cM)	+	+						X05502	[3]				Jgamma4	AF021335	[5]
	TRGJ4		TRGJ4*01	F	13 (10.0 cM)	+	+						X05502	[3]			C57BL/6J		IMGT000133	[6]		MAP	174111-174171	(3)

IMGT notes:

(1) The TRGJ2 as well as the associated TRGV2 and TRGC2 genes are in inverted orientation of transcription, compared to the other genes of the mouse TRG locus.
(2) Partial sequence: no J-HEPTAMER and no J-NONAMER.
(3) Position of J-GENE-UNIT
(4) Position of J-REGION

IMGT references:

[1] Hayday A.C. et al., Cell, 4, 259-269 (1985). PMID:3917858
[2] Traunecker A. et al., EMBO J., 5, 1589-1593 (1986). PMID:3017705
[3] Pelkonen J. et al., EMBO J., 6, 1941-1944 (1987). PMID:3653075
[4] Zhou Q. et al., Unpublished.
[5] Parlee M.J. et al., Unpublished.
[6] Church,D.M. et al., PLoS Biol. 7 (5), e1000112 (2009). PMID:19468303

See also (IMGT Scientific chart):

Created:: 01/03/2001
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: house mouse (Mus musculus) TRGJ