Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of western lowland gorilla (Gorilla gorilla gorilla) TRBC IMGT group:
IMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation		Chromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		IsolateClone namesAccession
numbers		Positions
in the sequence
TRBC1 TRBC1*01 F EX1 Kamilah BK064850✤ [1] MAP 530438-530824 KB3781 BK064852✤ [1] 531841-532227
TRBC1 TRBC1*01 F EX2 Kamilah BK064850✤ [1] MAP 531266-531283 KB3781 BK064852✤ [1] 532669-532686
TRBC1 TRBC1*01 F EX3 Kamilah BK064850✤ [1] MAP 531436-531542 KB3781 BK064852✤ [1] 532839-532945
TRBC1 TRBC1*01 F EX4 Kamilah BK064850✤ [1] 531865-531882 KB3781 BK064852✤ [1] 533268-533285
TRBC1 TRBC1*02 F EX1 Susie3 BK064851✤ MAP 600101-600487 KB3781 BK064853✤ [1] 531683-532069
TRBC1 TRBC1*02 F EX2 Susie3 BK064851✤ MAP 600929-600946 KB3781 BK064853✤ [1] 532511-532528
TRBC1 TRBC1*02 F EX3 Susie3 BK064851✤ MAP 601099-601205 KB3781 BK064853✤ [1] 532681-532787
TRBC1 TRBC1*02 F EX4 Susie3 BK064851✤ 601528-601545 KB3781 BK064853✤ [1] 533110-533127
TRBC2 TRBC2*01 F EX1 Kamilah BK064850✤ [1] MAP 539726-540112 KB3781 BK064852✤ [1] 541129-541515
KB3781 BK064853✤ [1] 540971-541357
Susie3 BK064851✤ 609389-609775
TRBC2 TRBC2*01 F EX2 Kamilah BK064850✤ [1] MAP 540628-540645 KB3781 BK064852✤ [1] 542031-542048
KB3781 BK064853✤ [1] 541873-541890
Susie3 BK064851✤ 610291-610308
TRBC2 TRBC2*01 F EX3 Kamilah BK064850✤ [1] MAP 540789-540895 KB3781 BK064852✤ [1] 542192-542298
KB3781 BK064853✤ [1] 542034-542140
Susie3 BK064851✤ 610452-610558
TRBC2 TRBC2*01 F EX4 Kamilah BK064850✤ [1] 541187-541210 KB3781 BK064852✤ [1] 542590-542613
KB3781 BK064853✤ [1] 542432-542455
Susie3 BK064851✤ 610850-610873

✤ : NCBI accession number that correspond to a previously internal IMGT accession number. See the correspondence table.

IMGT references: ↑
  1. Manso,T. et al., IMGT(R) databases, related tools and web resources through three main axes of research and development, Nucleic Acids Res, vol. 50, no. D1, 2022, pp. D1262-D1272. PUBMED: 34875068